Pnob065362.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilobothrus nobilitatus
Gene Symbol
sip1
Assembly
GCA_947095535.1
Location
OX352774.1:172530606-172533089[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.3e-89 4.5e-85 287.5 13.4 1 275 399 665 399 665 0.98
2 2 0.26 9e+03 -2.1 0.1 245 270 680 705 674 710 0.76

Sequence Information

Coding Sequence
ATGTCAGATGTGGAATATGAACGTTTTGAAATCACCGATTACGATTTGGATAATGAATTTAATATAAATCGACCGAGAAAACGTTATTCAAAGCAACAACAGATTTATGGTATTTGGGCTGATGATAGTGACAATGACGATGATGAACTTACAACTCGTAAAAATCGTCGAAATAAAATGGGTGGATCTAAACAAAAAGATTATTCAGCACCAGTTAGTTTTGTTGCCGGCGGAATTCAACAGTCTGGTAAAAAAGATAAAGGCAAAGAAGAAATAGAAGATGATAATAATCAAATAACAGATGAAGAAGATGAACAACCAAGATTTAGTGGGCGAAATCGTCTGGAAGACCTCGAAAAGAACACATCAAGTGAATCAGAAGCAGAAGAAGCACCAAGAGCTGGTTTTGGTTCTAAAAAACCTAGTCAATCATCAACTACAAGCAATAGTTTAGCGGCATGGGAAAGACATACCAAAGGAATAGGGGCTAAACTCCTTTTACAGATGGGTTATGAGCCAGGTAAAGGTCTTGGAAAAGATCTTCAAGGTATATCTCGACCGGTTGAAGCACATATGAGAAAAGGTCGTGGTGCAATTGGTGCTTATGGCCCAGAAAAAGCTGCAAACGTTCCTGGACAAATTGTATGCCCACCTATTGATGAAGATGTTAAAGAAGAAAAAGAATTTAAAGAAAAATTGAACCAATGGAAAAAGGGTTCAACAGATAAAAAAGACAAAAAAAAAAGGTATTATTACAAATCAGTGGATGAAATTATAGAGAAAAGTAAAAAACAAGTTAGTTCGCATTTTTCGGATAATTATAGTAAAAAAATGAGTAATGTTACAGTAATAGATATGACAGGACCAGAAAAACGAGTTCTTAGTGGTTACCATGCATTAGGTCAAGCTAAAATTGCTGATGAAGATTTATATGAACATCGTCCTACAAAAAAGACTACTCATTTTGCTCTTCCAGAACTGATGCATAACTTAAATTTAATCGTGAACATGTGCGAACAAGATATTATTGCTGTTGATCGTGCTGAAAGAGAAGCAAATGACAAACAGAAGCAACTGGAACATGAAAAGGAAAATTTGGAGAAAATAGTTAAACTTGAAGAAGATCATATTAACACTTTAGAATTAGCACTCGAACTGGTCGAAACTTTAACTAATCCGGATGAAAATTTAACTTTGGAAGATGCTGAAAAAATATTTATTAGATTGCAAACAGATTATGCAGCCGAATATAAAGAATTCGGTTTAGGTGATTTAGCTGCTGGTATTATAGCTCCACTTATTAATAACGAATTAAAGAATTGGAAACCATTGGAAGAACCTACAAAATATGTGAACAAAATAAAAAAATGGCAAAATATCTTAGGAACACATCAATCTGAAATCAGAAGTGTTTTTGATCCCTACTCTTCTATAATATGGTCTGGAGTTGTACCCCAATTAAGAATTTGTGCGACTGATTGGAATCCGAAAGCACATCAAAGAATGGCTGCATTATTGGATACTTGGGCGCCACTATTTCCTACTTGGATATTAGATAACGTTTTAGAACAATTAATTTTACCAAAATTAATTACCGGTGTAAATGAATGGGATCCATTAACTGATACTATACCCATACATAGTTGGATTCTACCGTGGAATGGAATATTAGGTCATAAAATGGAAGAATTTATATTTCCTATAATTCGTGAAAAATTAGCAGATGCTTTAACAGCATGGATACCAAATGATAGATCAGCACGAGCAATGCTCTATCCATGGAAAGAAGCATTTAAGCAACCTGAAATGGAAGCATTCGTTGTTCAGAATATTATTCCAAAATTGCAAATTGTTTTAAATGAATTAATTATTGATCCATTACATCAAGATTGGGAATTATGGAATCAAGTATATGAATGGAATGAGTTAATTTCACCACTTTTAATGGCACAAATGCTTGATAAATATTTTTTCCCAAAATGGACTCAAACACTAATTATTTGGTTAAATCAATTGCCTAATTTTGATCAAATTTCTCAATGGTATACAGGTTGGAAAAGTCTTATATCTGAAGAAATATTAAGTCAACCAACAGTTAAAGAACATTTTCGAAGAGCATTAGAAATGATGCATCGAGCAACCCAACCTGCTTCTATTGTTGATGCTCAGCAAGCATCGGTATTGCCACCACAAGGGATTCCGCCACCACCATCCATTATTGAAAAACCACCAGCATTAATGGATCTTCCAATAATTGCACCACCACAATTAGAATTCAAAGAATTAGTTTCACAAAAGTGCGCAGAACGTGGTATTATATTTGCACCTATGCCTGGTCGAAGAGAATTTGGAAAACAGGTTTATCGAATTGGAAAATTATTTTGTTATATTGATAGATCTGTTCTTATGGTTAGTGATGGAACTTTTACAAATTGGATACCAATATCATTACCAGTTCTAATAGAAAGGGCGCAAAATGGGTAA
Protein Sequence
MSDVEYERFEITDYDLDNEFNINRPRKRYSKQQQIYGIWADDSDNDDDELTTRKNRRNKMGGSKQKDYSAPVSFVAGGIQQSGKKDKGKEEIEDDNNQITDEEDEQPRFSGRNRLEDLEKNTSSESEAEEAPRAGFGSKKPSQSSTTSNSLAAWERHTKGIGAKLLLQMGYEPGKGLGKDLQGISRPVEAHMRKGRGAIGAYGPEKAANVPGQIVCPPIDEDVKEEKEFKEKLNQWKKGSTDKKDKKKRYYYKSVDEIIEKSKKQVSSHFSDNYSKKMSNVTVIDMTGPEKRVLSGYHALGQAKIADEDLYEHRPTKKTTHFALPELMHNLNLIVNMCEQDIIAVDRAEREANDKQKQLEHEKENLEKIVKLEEDHINTLELALELVETLTNPDENLTLEDAEKIFIRLQTDYAAEYKEFGLGDLAAGIIAPLINNELKNWKPLEEPTKYVNKIKKWQNILGTHQSEIRSVFDPYSSIIWSGVVPQLRICATDWNPKAHQRMAALLDTWAPLFPTWILDNVLEQLILPKLITGVNEWDPLTDTIPIHSWILPWNGILGHKMEEFIFPIIREKLADALTAWIPNDRSARAMLYPWKEAFKQPEMEAFVVQNIIPKLQIVLNELIIDPLHQDWELWNQVYEWNELISPLLMAQMLDKYFFPKWTQTLIIWLNQLPNFDQISQWYTGWKSLISEEILSQPTVKEHFRRALEMMHRATQPASIVDAQQASVLPPQGIPPPPSIIEKPPALMDLPIIAPPQLEFKELVSQKCAERGIIFAPMPGRREFGKQVYRIGKLFCYIDRSVLMVSDGTFTNWIPISLPVLIERAQNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00363252; iTF_00160692;
90% Identity
-
80% Identity
-