Pnob050196.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:170660411-170668153[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-10 3.3e-07 31.8 0.0 1 38 624 662 624 667 0.90 2 4 3.6e-13 3.7e-10 41.2 0.1 2 39 679 716 678 719 0.94 3 4 5.1e-16 5.3e-13 50.3 0.0 1 45 733 778 733 778 0.98 4 4 0.55 5.8e+02 2.2 0.1 1 13 785 797 785 797 0.91
Sequence Information
- Coding Sequence
- ATGGAACTTTTAACCGATTTTAACCCATACAGTAGAAATCGAAAATGTGGATTATTACGTACTGCTGAACAATTAAAAATCAAAGGTTTATGTGAAACAGCTGATTCAACTGATGAAAATTCAACAGATACAACAACAAATACAACAATAACGGTGCCACAAGAAACATTATTGCAAACACAATCACAAATTTTAACTGGTAGTCTTATTTCCCAAAATTCCTTACAAACAAATtcatcccaacaacaacaacaacaacaacaaacaacaacaactaataataatagtgttataaatcatagtcaacaaaatcaacaattattagctactacaacaagtgcgggacaatctgcattattttcaatagcatcatcttcaataccaactacaactacaacacaatcattaacaacatcatcatcacaaactcaattaataacaacaccaacaacaacaacacatcaacgtaaatcaacacgtgttagaaaacgttcaaaatcaccagtgattttaacaacacaacaagattcatcaacacaatcttcaataacaacaacacaacaacagcaacaacaacaagttgttacagcagctgctatacaacaagcagtacaacagcaagcaattgttattgcaacagcagcagccggaggaaatccagcatttagtaattcatcatcaattgtaacattaaatccaaatacaggtacaataaccacaataccaagtggatctggtagtataataacagtaccagctaataatagttctaatacaataacattaacgggtcagacaggaattcaaaattctgattcatcatcaacgaatagttcacaacatcaacaacaacaacagcaacaaattgttgttgcaacatctagtggtaatacaataggaacaattgtaacTGGTTGTTGTTCAAGTTCATCAACAGTATCTGGTACTGCGACAGTAGTTAATGCAAAAGCGACAAAAGTTTGTAAAACTGAGTTAGCAACAAGTAATGGAAGTGGCGTTGTTACGCCTGGTACAATAGTAACACAAATAGTTGTAGCACGTGACGGTAAAGATAATAAAAATATGACCAGTTTAGGAATGGGAATGAATGGAGGAATTTTGGGAGTTCCGATGGGATTTTTGGATTTTGCTCCAGAACCACCGGCACCATCAGCGACACCTGTAACTGAACATGTTGATATGAATTGTGCACCAAGCAATGATACAAGAGACTTATCTAatcccaccgaaacccttgacattgacaatcatttagcccaacatattattcaacgtttagatcaaactccaacaatacaacaacaaattcagcatcatcagcaacaacagcaacaacaacaacagcagcagcaacaacagcaacaacaacaacaacatcatcaccaacaacaacaccaacaccaacaacaacatcattcacaaaataccaccaataatagtaacaatattgccaatgaaacaaattcaaatttaatacaaaatattaaaagcgaaataattgaagtcaagcatcatatacaacctcaaacccatcttcaacaacaacaacaacaacaacagcaacaacaacaatcacaacaatcacaaggacaatcacatcatcaggttataacaaatgctaccgttatggaaaTTGATCCGAATAATATTAAACATGAACCACAAATGATCATAACCCCAGAGATCGCAACAATTATGAATACTGGACATATGGACATTTACAATTCGGACACTAGTGAAGACAGCCTGATGATTGCTAATGGTTCCCCGAATGACAATAATGCGGAGCCGCATTATACTAATTTGGACCAACCACATGATAGTAAGTTAAATGGCCCGAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCCCTGAAGAATCACAATATGAGCTTGACGAAGGCATCGGTTACATATGGTATACCATCAACAACATTATGGCAGCGTGCACATCGGATGGGTATTGAGACACCAAAAAAAGAAGGAAGTACTAAGTCATGGAATGAAGATGCCCTAAATAGTGCTTTAGAAGCTTTACGAACTGGTCAAATATCAGCAAATAAAGCATCAAAAGCCTATGGTATTCCGTCCTCAACGTTGTATAAGATAGCAAGACGAGAAGGTATACGACTAGCGGCACCATTCAACGCAGCACCAACAACATGGACACCAGAAGACTTGGAGAGAGCATTAGAGGCAATACGTGCTGGTCACACATCCGTCCAGAAAGCAAGCATGGAATTTAATATCCCAACAGGTACTCTATATGGACGTTGTAAAAGAGAAGGAATTGAACTTTCACGTTCAAATCCAACTCCATGGTCTGAGGATGCTATGAATGAAGCATTAGTTGCTGTTAGGTGA
- Protein Sequence
- MELLTDFNPYSRNRKCGLLRTAEQLKIKGLCETADSTDENSTDTTTNTTITVPQETLLQTQSQILTGSLISQNSLQTNSSQQQQQQQQTTTTNNNSVINHSQQNQQLLATTTSAGQSALFSIASSSIPTTTTTQSLTTSSSQTQLITTPTTTTHQRKSTRVRKRSKSPVILTTQQDSSTQSSITTTQQQQQQQVVTAAAIQQAVQQQAIVIATAAAGGNPAFSNSSSIVTLNPNTGTITTIPSGSGSIITVPANNSSNTITLTGQTGIQNSDSSSTNSSQHQQQQQQQIVVATSSGNTIGTIVTGCCSSSSTVSGTATVVNAKATKVCKTELATSNGSGVVTPGTIVTQIVVARDGKDNKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTEHVDMNCAPSNDTRDLSNPTETLDIDNHLAQHIIQRLDQTPTIQQQIQHHQQQQQQQQQQQQQQQQQQQHHHQQQHQHQQQHHSQNTTNNSNNIANETNSNLIQNIKSEIIEVKHHIQPQTHLQQQQQQQQQQQQSQQSQGQSHHQVITNATVMEIDPNNIKHEPQMIITPEIATIMNTGHMDIYNSDTSEDSLMIANGSPNDNNAEPHYTNLDQPHDSKLNGPKTWTQDDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGSTKSWNEDALNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASMEFNIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00363166; iTF_00160576;
- 90% Identity
- -
- 80% Identity
- -