Clon011743.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000048.1:1307636-1328420[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-11 1.3e-07 31.9 0.0 1 38 588 626 588 631 0.90 2 4 7.5e-14 1.5e-10 41.3 0.1 2 39 643 680 642 683 0.94 3 4 1.1e-16 2.1e-13 50.4 0.0 1 45 697 742 697 742 0.98 4 4 0.12 2.3e+02 2.3 0.1 1 13 749 761 749 761 0.91
Sequence Information
- Coding Sequence
- ATGGGCGATGTTGATGTTGTTGGTGATGATAAAAATGAGGATgatgctgatgatgatgataacatTGAAGGATTGTTGAGAACAGCAGAACAATTGAAAATCAAAGGCTTATGTGAAACAGCTGAAACAACCGATGAAAACTCAACTGATACAACAACAAATACAACCATAACGGTGCCACAAGAAACTTTATTACACACACAATCTCAAATCCTAACTGGCAATCTAGTATCCCAAAATTCCTTACAAACAAATTCTTCCCAATCGACGTTAAATAGTGTCATAAATCATAGTCAAAGTCAACAAATATTAagtgcaacaacaacaactggACAACCAACATTATTTTCCATAGCATCATCAATACCAACTACAACTACAACACAGTCATTAACTACAACACAAACGACAGCGCAACGTAAAGCGCGTGTTAGAAAACGATCTAAATCACCGGTTATTCTAACAACAACTGATTCAACTTCAACTACATCAACAGCACAGCAACAAGCTACAGCAGCTGCAATACAACAAGCAGTACAACAGCAGGCAATTGTTATTGCAACAGCAACAGGAACTCAAGCATTTAGTAATTCATCATCAATTGTAACATTAAATCCAAATACAGGTACAATAACAACGATACCAAGTGGTACCGGTAGTATAATAACAGTACCAGCAAGTAGTAGCTGTAATACATTAGCGGTAACAGgtcaaacaaatcaaaattctgATACGTCATCAGGCGGTAGTACGCAACAACAAACGCAGCAGCCCCAACAAATTGTTGTAGCTACATCTAGTGGTAATACTATAGGAACAATTGTAACTGGTGGATCAAGTGCATCAACGGTATCTGGAACAGCGACTGTAGTTAATGCAAAAGCGACAAAAGTTTGTAAAACTGAGTTAGCAACAAGTAATGGAAGTGGCGTTGTTACGCCAGGTACAATAGTAACACAAATAGTTGTAGCACGTGACAGTAAAGATAGTAAAAGTATGACCAGTTTAGGAATGGGAAtgaatGGAGGAATTTTGGGAGTACCGATGGGATTTTTAGATTTTGCCCCTGAACCACCGGCACCATCGGCAACACCCGTCACTGAACATGTTGACATGAATTGCGCACCAAGTTCAGATACAAGAGACTTATCTAATCCCACCGAAACCCTTGACATTGACAATCATTTAGCCCAACATATTATTCAACGTTTAGATCAAACACCAATCCAACAAATTCAACATCACCAAGATCAACAccagcaacaacagcagcagcaacaacaacaacatcatccacatcatcatcaacagcaacaacatcagcaacagcagcaacatCAACAAAATACCAccaataatagtaacaatattgCCAatgaaacaaattcaaatttaatacaaaatattaaaagcgaaATAATTGAAGTCAAGCAACATCAATTACACGCTCAAGCCCATCATCAGCAAACCCAACAATCCCAACAGCAAGCACAACAGCAGGGACAATCTCATCATCAGGTTATAACAAATGCTACCGTTATGGAAATTGATccgaataatattaaacatgaaCCACAAATGATTATAACGCCAGAAATAGCAACTATAATGAATACTGGACATATGGatatttacaATTCGGACACAAGTGAAGACAGCCTGATGATTGCTAATGGTTCCCCGAATGACAACAATGCGGAGCCGCATTATACTAATTTGGATCAACCACATGATAGTAAGTTAAATGGCCCGAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCCCTGAAGAATCACAATATGAGCTTGACGAAGGCGTCGGTTACATATGGCATACCGTCAACAACGTTATGGCAACGAGCACATCGGATGGGTATTGAGACACCAAAAAAAGAAGGAAGTACCAAATCATGGAACGAAGACGCCCTGAACAGTGCTTTAGAAGCTTTAAGAACTGGTCAAATATCAGCAAATAAAGCATCAAAAGCCTATGGTATTCCGTCCTCAACACTATACAAGATAGCAAGACGAGAAGGCATAAGATTGGCGGCACCTTTCAACGCAGCACCTACAACATGGACACCAGAGGATTTAGAGAGAGCATTAGAGGCAATACGTGCTGGTCACACATCCGTCCAAAAAGCTAGTATGGAATTTAATATCCCAACAGGTACACTATACGGACGCTGTAAAAGGGAAGGAATTGAACTTTCACGATCGAATCCAACTCCATGGTCTGAGGATGCTATGAATGAAGCATTAGTCGCTGTTAGGTGA
- Protein Sequence
- MGDVDVVGDDKNEDDADDDDNIEGLLRTAEQLKIKGLCETAETTDENSTDTTTNTTITVPQETLLHTQSQILTGNLVSQNSLQTNSSQSTLNSVINHSQSQQILSATTTTGQPTLFSIASSIPTTTTTQSLTTTQTTAQRKARVRKRSKSPVILTTTDSTSTTSTAQQQATAAAIQQAVQQQAIVIATATGTQAFSNSSSIVTLNPNTGTITTIPSGTGSIITVPASSSCNTLAVTGQTNQNSDTSSGGSTQQQTQQPQQIVVATSSGNTIGTIVTGGSSASTVSGTATVVNAKATKVCKTELATSNGSGVVTPGTIVTQIVVARDSKDSKSMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTEHVDMNCAPSSDTRDLSNPTETLDIDNHLAQHIIQRLDQTPIQQIQHHQDQHQQQQQQQQQQHHPHHHQQQQHQQQQQHQQNTTNNSNNIANETNSNLIQNIKSEIIEVKQHQLHAQAHHQQTQQSQQQAQQQGQSHHQVITNATVMEIDPNNIKHEPQMIITPEIATIMNTGHMDIYNSDTSEDSLMIANGSPNDNNAEPHYTNLDQPHDSKLNGPKTWTQDDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGSTKSWNEDALNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASMEFNIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01224126;
- 90% Identity
- -
- 80% Identity
- -