Pper035478.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- Aef1
- Assembly
- GCA_963082735.1
- Location
- OY720431.1:7459176-7459808[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00094 28 6.6 0.5 13 46 75 107 66 110 0.79 2 4 6.7e-06 0.2 13.5 0.0 21 52 110 141 107 143 0.89 3 4 0.0023 70 5.4 0.1 21 51 138 168 135 169 0.87 4 4 6.1e-05 1.8 10.4 0.1 21 47 166 192 163 197 0.89
Sequence Information
- Coding Sequence
- ATGACTAATTGTGAAATCGTTATCGTTGCTACAACTGATGAACCAGCAACAGATTTGCAAATCCCCTTCAACGTGATAACCTCAGCGGCAACAGTTTCAGCGGCTGGTGCCACCACTACGACTCATCACCTCGCTCCACTGCAACTTACCGAACAGCAGCAATTGCTGCAGCCAGAAACTCTCCAACAGCAAGTGCAAGCAGGGACACTACCGCCGCATTTGGATCGTCCGCCAACTAACGGTCCCGAGAAGCCATTCCAATGCAATATTTGTGAACGAAGATTTCGACAGTTGAGCACACTAACGAATCACGTGAAAATTCATACCGGCGAGAAACCCTACAAATGCACGATCTGCGACAAAACCTTTCGGCAATCGAGCACCCTTACAAATCACATGAAAATCCACACCGGCGAGAAACCATTCATCTGCTCGTACTGTCCCAAGCAGTTTCGTCAGCTAAGCACGCTCACGAATCACCTGAAAATCCATACCGGAGAAAAACCATTCGAATGTGCCGTCTGCAAAAAACAATTCCGCCAATCGAGTACGCTCAACAATCACATAAAGATCCATGTAATGGACAAGGTATATATAccaataaaaatcaaaaccgAAGAGGACGAAGGATGA
- Protein Sequence
- MTNCEIVIVATTDEPATDLQIPFNVITSAATVSAAGATTTTHHLAPLQLTEQQQLLQPETLQQQVQAGTLPPHLDRPPTNGPEKPFQCNICERRFRQLSTLTNHVKIHTGEKPYKCTICDKTFRQSSTLTNHMKIHTGEKPFICSYCPKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYIPIKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223723;
- 90% Identity
- iTF_00672533;
- 80% Identity
- iTF_01223723;