Pfes026385.1
Basic Information
- Insect
- Plusia festucae
- Gene Symbol
- -
- Assembly
- GCA_950381575.1
- Location
- OX494460.1:5709658-5712012[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.9e-06 0.00025 22.0 4.1 1 23 8 31 8 31 0.95 2 20 2.6e-05 0.0022 19.1 0.5 2 23 37 59 36 59 0.95 3 20 0.0097 0.82 10.9 0.1 2 23 68 90 68 90 0.93 4 20 8.5e-06 0.00072 20.6 1.6 2 23 99 121 98 121 0.95 5 20 8.2e-06 0.0007 20.6 1.1 2 23 129 151 129 151 0.97 6 20 4.9e-07 4.2e-05 24.5 0.7 2 23 160 182 159 182 0.96 7 20 5e-07 4.3e-05 24.4 1.0 1 23 188 211 188 211 0.98 8 20 0.096 8.1 7.8 0.3 2 23 220 242 219 242 0.94 9 20 0.044 3.7 8.9 0.6 1 23 261 284 261 284 0.95 10 20 4.3e-05 0.0036 18.3 0.2 1 23 309 332 309 332 0.98 11 20 1.4 1.2e+02 4.1 0.2 2 20 340 358 339 360 0.91 12 20 0.016 1.4 10.2 2.2 2 23 369 391 369 391 0.95 13 20 0.001 0.085 14.0 5.5 1 23 412 435 412 435 0.97 14 20 4.3e-05 0.0037 18.3 0.5 2 23 442 464 441 464 0.96 15 20 4.6e-05 0.0039 18.3 2.1 2 23 471 493 471 493 0.94 16 20 0.05 4.3 8.7 3.8 1 23 499 522 499 522 0.95 17 20 0.19 16 6.9 7.1 2 23 530 552 530 552 0.95 18 20 0.0003 0.026 15.7 0.6 1 23 559 582 559 582 0.97 19 20 0.042 3.6 8.9 2.0 1 23 589 612 589 612 0.90 20 20 0.038 3.2 9.1 2.8 5 23 629 648 626 648 0.90
Sequence Information
- Coding Sequence
- ATGTACGAGAGCCTCCTGGACTATGTTTGTGACTACTGCTCCAGGACTTTCACCAGGAAATACAACCTCCAGACCCATATAGAGAACTGCCATATTAATGCCAGTTGTACATGTGACATTTGTGGCCAGAATTTCACCAGCCCGAACGGCCTCCAAGCCCATCTATCCAAAGGTCACAACAGCTATGGAGAATCGTACCCTGAATGTGACCTCTGTGGTCGCATATTTGCCCGAATACAGAATATTTCATCCCACATGATAGCTACACATCTTAAGGGTGTAGATTTTACGAAACGCTGCAGGATTTGCGAGAAAAACTTTTCGTCGCCACGTAGTTTGAAAAGACATATGAATCTGTTACATAATCCTGATATTGAGTACCCGACTTGTAATGAATGTAACAAGACATTTAAAGGCAAGCATGGGTTGATAGCGCATATCCAAACGGTTCATTCTGTAGTCGACAAAGATGTGGTTAAGTGCAACTTGTGTGATCGAGTGTATACAAATAACAGTAATTTGAAACGCCATATTGAAATGTTTCATGGAGAAAAGAGTGAGTATCGTTGCGATATATGCCCAAAAGTTTACACCTCAAATCAGAGTTTGCGACGTCACGCGAGAACAAGACACAGTACTGACGATCAAGAGCAATTAACGTGCAATTATTGCTACAAAGTGATAATCGGGAGAGAGAATTTTGATAGCCACATACAGTACAATCATCAGGAAACAATCGTAAAAACCGAAAATGATATGGAGATTGATACAAAAAACTATTTCTTTTGCGATTTTTGTGACCAAAGCTTTGGCGAAGAACGTGTATTACGGAATCACGTGAAAAATGAGCATTCGTTCAAATGTTTCTACAAGTATTGCAGGAAGTCGTTATTAAGGCAGTACGGCTCAGATTTCTTGCAGACTTATTATTGTGAGTTTTGCGGGAACCCTTTCCCAACTGTTTACGAATTGAAAGACCATATGCGGATTGATCATGATGCTGAATATTCTCTTTCAACCTGTAATGTATGCTTCAACAAGTTTTACAGCAAAGAGGCCGTATCAGCCCACAAGGAGGTCTGCAAACCTCCCCCAAACGTGAATTCCTGTAGTCACTGCGATAAATTATTCACGGATGTTTCGAGTCTTGAATTTCATACAAGGATTTTTCATCCACAATCTCAAATTGCGGATTCTAATATTTCCTCGACTTATATAGATGATGAAATGGCTTTTAAATGTGAGCATTGTGACAGAGTGTATTACAGTGATAGGTCTTTGAAACACCATATTAAGTTAAAACATACCACAGACGAGGCTGTGGAATGTGAATTCTGTGGAAAGATCTGTAGTAACAAGTATTATTTGGCGTCACATATAAAAATAGTCCATAATAACGACTCGTGGGCTCGTTGCGAATATTGCGACAAGCAATTCAAATCAAAACGAAATATACGTCGCCATATAGAGTACACACATTTGGGGATGCAAAGACATAAGTGTATCGAATGTGAAACTTTATTTAAGGAGAAAAGAAGTCTCAGAAAACATGTAAGAACGAAGCATCCAGATTCAACCGCTTTCCCTCAGTGCCATATCTGCCACAAACGGTTTGAATCAGCCAAATCTTGCAAAATACACCTTAAGTTACTTCATTCGTTCAATATGAACACATTCCCCTGTCATCTATGTTCAGTTTCGTTCAGTTCCAACGAAGCCTTGGATATACATGTGAAAACTAAACATTTGGCTGAAGACGAAATTTACAAATGCGAGCAATGTAATATTGTGTTCAAGGGGCAAGAAAAGTTTGACAGCCATAATGAAGTGTGTCACGTTAATTTGGTCACGAATGTAAAGGAGAAAGTTTTGCCTCGGTGTATTCTTTGTATGAAGGACTTCAGTACTCGTAAAACTCTGAAACGACATATTAAGAAGTTCCACATTGATTTTGACGTTGACGAGTTGGCAACCTTTGGGTCACGACGTCGAAATTTCATTGTTGAATGCGATGAATGCATAAAGAACTTCAATAAcgaattctattttaatatctaccAGAAATTGAAGCATATTCGTGATTCTATAGTGTTCAAATGTGAGACGTGTCTTGGTTCATATAATTCTTTAGAATTTGCGATCCAGAGGTACAAAGCCTCGAATGGAGAAAATTTCAGAAGTAAGATGATTTTAAGTGAGCTCTGTACGACGGAAATGAGTGAAGAAGAAGCGGATTTTTCCGGTTTCGGAGCGTTACATGATATGCTCCCGGAGAGTACGACGAACGAGATCAAATTGGAGTTGTTTGAAGAAACGTTCGGGGCTGAAATAAAGATGGAACCGCCGTCGCCATAG
- Protein Sequence
- MYESLLDYVCDYCSRTFTRKYNLQTHIENCHINASCTCDICGQNFTSPNGLQAHLSKGHNSYGESYPECDLCGRIFARIQNISSHMIATHLKGVDFTKRCRICEKNFSSPRSLKRHMNLLHNPDIEYPTCNECNKTFKGKHGLIAHIQTVHSVVDKDVVKCNLCDRVYTNNSNLKRHIEMFHGEKSEYRCDICPKVYTSNQSLRRHARTRHSTDDQEQLTCNYCYKVIIGRENFDSHIQYNHQETIVKTENDMEIDTKNYFFCDFCDQSFGEERVLRNHVKNEHSFKCFYKYCRKSLLRQYGSDFLQTYYCEFCGNPFPTVYELKDHMRIDHDAEYSLSTCNVCFNKFYSKEAVSAHKEVCKPPPNVNSCSHCDKLFTDVSSLEFHTRIFHPQSQIADSNISSTYIDDEMAFKCEHCDRVYYSDRSLKHHIKLKHTTDEAVECEFCGKICSNKYYLASHIKIVHNNDSWARCEYCDKQFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRTKHPDSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCHLCSVSFSSNEALDIHVKTKHLAEDEIYKCEQCNIVFKGQEKFDSHNEVCHVNLVTNVKEKVLPRCILCMKDFSTRKTLKRHIKKFHIDFDVDELATFGSRRRNFIVECDECIKNFNNEFYFNIYQKLKHIRDSIVFKCETCLGSYNSLEFAIQRYKASNGENFRSKMILSELCTTEMSEEEADFSGFGALHDMLPESTTNEIKLELFEETFGAEIKMEPPSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01221800; iTF_00185504; iTF_01487890; iTF_01487891; iTF_01487898; iTF_01487899; iTF_00186484;
- 90% Identity
- iTF_01221800;
- 80% Identity
- iTF_01221800;