Apul006162.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997792.1:1227252-1229609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.6e-06 0.00037 21.5 4.2 1 23 8 31 8 31 0.95 2 20 7.4e-05 0.0077 17.4 0.2 2 23 37 59 35 59 0.92 3 20 1e-05 0.0011 20.1 0.2 2 23 68 90 68 90 0.96 4 20 6.9e-05 0.0071 17.5 2.8 2 23 99 121 98 121 0.94 5 20 5.1e-05 0.0053 17.9 0.5 2 23 129 151 128 151 0.96 6 20 2.2e-07 2.2e-05 25.4 0.9 2 23 160 182 159 182 0.96 7 20 5.2e-07 5.3e-05 24.2 1.2 1 23 188 211 188 211 0.98 8 20 0.0036 0.37 12.1 0.6 2 23 220 242 219 242 0.95 9 20 0.03 3.1 9.2 0.8 1 23 259 282 259 282 0.95 10 20 0.00024 0.025 15.8 0.2 1 23 307 330 307 330 0.98 11 20 2.6 2.7e+02 3.1 0.2 2 20 338 356 337 358 0.90 12 20 0.015 1.6 10.1 2.2 2 23 367 389 367 389 0.95 13 20 0.00022 0.023 15.9 5.5 1 23 410 433 410 433 0.97 14 20 2.8e-05 0.0029 18.7 0.4 2 23 440 462 439 462 0.96 15 20 3.2e-05 0.0033 18.5 2.1 2 23 469 491 468 491 0.94 16 20 0.0018 0.19 13.0 3.9 1 23 497 520 497 520 0.98 17 20 0.16 17 6.9 7.1 2 23 528 550 528 550 0.95 18 20 3.8e-05 0.0039 18.3 0.6 1 23 557 580 557 580 0.97 19 20 0.007 0.72 11.2 2.6 1 23 587 610 587 610 0.95 20 20 0.036 3.7 8.9 2.2 6 23 628 646 624 646 0.89
Sequence Information
- Coding Sequence
- ATGTACGAAAGCCTCCTCGACTTTGTTTGCGATTACTGTTCACGAACATTCACAAGGAAATACAATCTACAAACTCACATTGAAAACTGCCATATAAACTCGATATGTAACTGCGTGATTTGTGGCCAGACATTTAACAGCCCAGCCGGCTTACAAGCCCATTTGACTAAAGGCCATAACAGTTATGGCGAGTCTTACCCCGAATGCGACCTCTGTGGTCGAATTTTTGCCAGAAAACAGAGCCTTACATCCCATATGTTATCTGTACACCTCAAGTTCATAGACTATTCGAAAAGATGTAGGATCTGTGAGAAGGATTTCTCGTCCCCGCGCAGTTTGAAACGACATATGCATTTGTTGCATAACCCCAATATGGAATACCTGACTTGCAATGAATGCAACAAGATATATAAGGGCAAACATGGTTTGATAGCACATATTCAAACGGTGCATACAGTCATCGAGAAAGGTTTAATAAAATGCACTTTGTGTGATAAAGTGTACACGAATAATAGTAACCTGAAACGCCATATTGAAATGTTTCACGGTGAAAAGGGGGAATACCGTTGTGATATTTGTCCTAAAGTCTATACGTCCAATCAAAGCTTGCGACGTCACGAGAGAACGAGACACAGCACCGACGATCGGGAGCAATTAACGTGCAATTATTGCTACAAAGTGATAACAGGGCGCGAAAATTTCGAAAGTCATATAAAATATAATCATAAAGAAACAAATGTAAAAATCGAAAATGACGAAGACATTAAAACATTTTACTTTTGCGAATTTTGTGAACAAAGCTTCAACGAAGAGAGGGTGTTACGGAATCATGTGAAAAACGATCATTCTTTCAACTCTTTTTACAAGTATTGTAGGAAATCGTTGCTTAAACAGTATGGGTCAGATTTGACACAGACCTACTACTGTGAATTTTGCGGGGATCCTTTTCCTACGGTCTACGAACTAAAAGATCATATGAGGATAAACCATGACACTGAATACTCTCTTTCCACTTGTAATGTGTGCTTCAACAAGTTTTTTAGCAAAGAGGCTGTTTCCGCACACAAGGAGGTCTGCATACCTCCCCCAAACGTTAATTCCTGCAGCCACTGTGATAAGCTATTTACGGATATCTCAAGTTTAGAATTTCATACAAGGATTTTTCACCCACAAGCTCAAATAGCAGATTCTAATATCACATCAACAAATATCGACGATGATATGGCATTTAAATGTGATCACTGCGACCGAGTTTATTACAGCGAGAGATCTTTAAAACATCATATTAAATTAAAACATACAACCGACGAGGAAGTAGAGTGTGAATTATGTGGAAAAATCTGCAGTAACAAGTACTACTTAGCGTCTCATATAAAAATCGTTCACAACAACGATTCGTGGTCTCGCTGCGAATACTGCGACAAGCAATTTAAGTCGAAAAGGAATATCCGTCGACATATTGAATACACACATTTGGGTATGCAAAGACATAAATGTGTTGAATGTGAAACGCTATTCAAAGAAAAAAGGAGTTTAAGAAAACATGTGAGGACAAAGCATCCAGATTCGACCGCGTTTCCACAGTGCCATATTTGCCACAAACGCTTCGAATCAGCGAAATCTTGTAAGATACATTTAAAGTTACTTCACTCGTTCAATATGAATACATACCCGTGCCACTTATGCTCAGTCTCATTCAGTTCAAACGAAGCTTTAACAATTCATCTTGAAACAAAACACTTAGCTGAAGACGAAATTTACAAATGCGAGCAATGTAATATAGTCTTCAAGGGCCAAGAGAAATTTGAGAGTCACAATGACACCTGTCATGTGAATTTGGTCCCTAATGTAAAAGATAAAGTGCTACCAAGATGCATTCTTTGTATAAAAGACTTCAGTACGCGCAAAACATTGAAACGACATATAAAAAAGTTTCACGGTGATTTTGATGTGGATGAGTTAGCTACTTTTGGGTCAAAACGTCGAAATTTCATCGTTGATTGCGATGAGTGTATTAAGAAATTTAATGACGAGTTTTATTATAATATTTTTCAGAAGTTAAAGCATATTAAAGACTCTATAGTTTTCAAATGTGAGAGCTGTTTGAGCTCGTATAATTCTTTAGAATTTGCGATACAGAGGTTTAAAGTGACAAGTGGAGAATCGTTTAGGAGTAAAATGATTTTAAGTGAATTATGTACGACACAAATGAGTGAGGAGGAAGCGGATTTTTCCGGTTTCGGAGCCTTACATGACATGCTCCCCGAAAGTACTACGAATGAGATCAAAATGGAGTTGTGTGAAGAAACATTTGATGCTGAAATTAAGATGGAACCACCGTCGCCGGAGTCTCAATAA
- Protein Sequence
- MYESLLDFVCDYCSRTFTRKYNLQTHIENCHINSICNCVICGQTFNSPAGLQAHLTKGHNSYGESYPECDLCGRIFARKQSLTSHMLSVHLKFIDYSKRCRICEKDFSSPRSLKRHMHLLHNPNMEYLTCNECNKIYKGKHGLIAHIQTVHTVIEKGLIKCTLCDKVYTNNSNLKRHIEMFHGEKGEYRCDICPKVYTSNQSLRRHERTRHSTDDREQLTCNYCYKVITGRENFESHIKYNHKETNVKIENDEDIKTFYFCEFCEQSFNEERVLRNHVKNDHSFNSFYKYCRKSLLKQYGSDLTQTYYCEFCGDPFPTVYELKDHMRINHDTEYSLSTCNVCFNKFFSKEAVSAHKEVCIPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIDDDMAFKCDHCDRVYYSERSLKHHIKLKHTTDEEVECELCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRHKCVECETLFKEKRSLRKHVRTKHPDSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLETKHLAEDEIYKCEQCNIVFKGQEKFESHNDTCHVNLVPNVKDKVLPRCILCIKDFSTRKTLKRHIKKFHGDFDVDELATFGSKRRNFIVDCDECIKKFNDEFYYNIFQKLKHIKDSIVFKCESCLSSYNSLEFAIQRFKVTSGESFRSKMILSELCTTQMSEEEADFSGFGALHDMLPESTTNEIKMELCEETFDAEIKMEPPSPESQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01221816;
- 90% Identity
- iTF_00185504;
- 80% Identity
- -