Tni002162.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichoplusia ni
Gene Symbol
-
Assembly
GCA_003590095.1
Location
NC:5819394-5824347[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0035 3 7.7 1.5 18 43 9 31 7 32 0.94
2 17 0.17 1.5e+02 2.2 0.4 18 44 37 60 33 60 0.85
3 17 0.004 3.5 7.5 0.2 18 41 68 88 67 94 0.72
4 17 0.0048 4.2 7.2 2.5 17 43 98 121 90 122 0.81
5 17 0.0019 1.6 8.5 0.4 18 43 129 151 128 152 0.94
6 17 1.6e-05 0.014 15.1 0.3 14 43 156 182 153 183 0.88
7 17 0.0024 2.1 8.2 0.5 17 44 188 212 184 212 0.89
8 17 0.0024 2.1 8.2 0.1 17 44 219 243 213 243 0.88
9 17 0.041 36 4.2 0.1 12 43 251 279 245 280 0.75
10 17 0.31 2.7e+02 1.4 0.2 15 43 302 327 286 328 0.76
11 17 0.17 1.5e+02 2.2 0.2 14 29 360 375 351 383 0.83
12 17 0.034 29 4.5 2.5 13 43 403 430 396 431 0.83
13 17 0.036 31 4.4 6.7 4 29 423 448 420 460 0.76
14 17 1.5 1.3e+03 -0.8 13.0 13 43 461 488 453 518 0.80
15 17 4.5 3.9e+03 -2.3 0.1 15 26 582 593 578 598 0.76
16 17 7e-05 0.061 13.1 1.9 18 44 621 644 606 644 0.78
17 17 6.3 5.5e+03 -2.8 0.0 13 27 659 673 655 675 0.81

Sequence Information

Coding Sequence
ATGTACGAAAGCCTACTAGACTATGTCTGCGACTACTGCTCAAGAACATTCACAAGGAAATACAACTTGCAAACACATATTGAAAACTGCCATATCAACGCAGAATGTAACTGCAGTGTTTGTGGACAAACATTCAACAGTCCGGCCGGCTTGCAATCTCATTTGACCAAAGGGCATAATAGCTATGGAGAATGTTACCCAGAATGCGACCTCTGTGGTCGGATCTTCGccagaaaacaaaacataacctcCCATATGATAGCGGTCCACCTAAAAACGATTGACTTTACGAAACGGTGCAGAATATGTCAGAAGGATTTCTCTTCAGCGCGCAGTTTGAAACGCCATATGAACTTGTTACACAATCCCAATATTGAATACCCGACTTGCAGTGAatgtaataagatttttaaGGGGAAACATGCCTTGATAGCTCACATACAATCTGTCCACACAGCTACCGACAAGGATTTGATAAAATGCAACCTGTGTGACAGAGTGTATACTAATAACAGCAACCTGAAACGCCATGTTGAAATGTTTCACGGTGAGAAAGGAGAGTATAGATGCGATATCTGCCCAAAAGTTTACACTTCAAATCAAAGTTTAAGACGACATGCTCGCACCAGACACAGTACTGACGATCAGGAGCAATTGACCTGCAATTTCTGCTACAAAGTCATAATAGGCAGGGAGAATTTTGAAAGTCATATTCAGTATAACCACCGAGAGCCATCGGAGACGGAAATTGAAACAAAGAACTCCTTGTACTGCGATTATTGTGAAAGAAGTTTCGAAGACGAAAGAGAGTTAAGAAGCCATGTTAAAAACGATCATTCATTCAATTCATTTTACAAGTATTGCCGAAAATCCTTGCTCAAGCAATACGGCTCCGATTTCTCTCAAACTTACAACTGTGAATTCTGCGGCAATCCTTTCCCGACAGTTTACGAGTTAAAAGACCATATGAGGGCCAATCATGATACAGAATACTCTCTGTCAACTTGCAACGTCTGCTTCGACAAGTTTTACAGCAAGGAGGCGGTATTAGCACACAAGGAGGTTTGCAAACCGCCGGCAAACGTCAACTCTTGCAGCCATTGCGATAAACTGTTCACAGACAAATCAAGCTTGGAGTTTCACACTCGGATCTTTCACCCGCAAGCACAGATCGCCGATTCTAATATAACATCAACTAACATAGACGATGAAATGGCTTACAAATGCGAGCATTGTGACCGAGTTTACTACAGCGACAGGTCTTTAAAACATCACGTCAAATTAAAACACACAACGGATGAGGCTGTCGAATGCGAATTTTGCGGGAAAATTTGTAGCAACAAATACTATTTGGCATCCCATATCAAAATAGTCCATAACAACGATTCCTGGTCTCGATGCGAGTACTGTGACAAGCAGTTTAAATCGAAGAGAAATATTCGGCGACACATCGAGTACACACATTTGGGCATGCAAAGGCACAAGTGTATTGAATGTGAGACTTTGTTTAAAGAGAAAAGAAGTCTTAGAAAACACGTCAGGACGAAACATCCCGATTCGACCGCCTTCCCCCAATGCCATATATGTCACAAGCGTTTCGAATCCGCGAAGTCTTGTAAAATTCACTTAAAACTTCTACATTCTTTCAACATGAACACACATCCTTGTCACCTCTGTTCGGTATCCTTCAGCTCAAATGAAGCTTTGACTATTCATCTTGAGACAAAACATCTCGCTGAAGACGAGATTTACAAATGCGAGAAATGCAATATCGTTTTTCAGGGGCAAGAGAAGTTTGACAGTCATAACGAAGTGTGTCACGCGAGTTTGGTGCCAAGTGCTAAGGAGAAAGTGTTGCCGCGTTGTATACTTTGCATGAAAGATTTTAGTACGAGGAAAACTTTAAAACGGCATATTAAGAAGTTTCATTCAGATTTTGACGGGGATGAATTAGCGACGTTTGGGTCTCGGCGGAGGAATTTCATTGTGGACTGCGATGATTGTATCAAAAATTTTAGTGATGAgttctatattaatatttatcagaAATTAAAGCATATTAGGGATTCGATTATATTTAAGTGCGATAGTTGTCTTGCTTCGTATAATTCTTTGGAGTTTGCCATTCAGAGGTATAAGGCGGCGAATGGGGATACTTTTAAGAGTAAAATGATTCTAAGTGAACTGTGTACGACGGAAATGAGTGAGGAGGAAGCGGATTTCTCCGGTTTCGGAGCGTTACACGACATGCTACCGGAAAGTACAACGAATGAGATAAAATTGGAGTTGTTCGAGGAACCTATGGATTTTGAAATTAAGATGGAACCGCCGTCGCCATAA
Protein Sequence
MYESLLDYVCDYCSRTFTRKYNLQTHIENCHINAECNCSVCGQTFNSPAGLQSHLTKGHNSYGECYPECDLCGRIFARKQNITSHMIAVHLKTIDFTKRCRICQKDFSSARSLKRHMNLLHNPNIEYPTCSECNKIFKGKHALIAHIQSVHTATDKDLIKCNLCDRVYTNNSNLKRHVEMFHGEKGEYRCDICPKVYTSNQSLRRHARTRHSTDDQEQLTCNFCYKVIIGRENFESHIQYNHREPSETEIETKNSLYCDYCERSFEDERELRSHVKNDHSFNSFYKYCRKSLLKQYGSDFSQTYNCEFCGNPFPTVYELKDHMRANHDTEYSLSTCNVCFDKFYSKEAVLAHKEVCKPPANVNSCSHCDKLFTDKSSLEFHTRIFHPQAQIADSNITSTNIDDEMAYKCEHCDRVYYSDRSLKHHVKLKHTTDEAVECEFCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRTKHPDSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSVSFSSNEALTIHLETKHLAEDEIYKCEKCNIVFQGQEKFDSHNEVCHASLVPSAKEKVLPRCILCMKDFSTRKTLKRHIKKFHSDFDGDELATFGSRRRNFIVDCDDCIKNFSDEFYINIYQKLKHIRDSIIFKCDSCLASYNSLEFAIQRYKAANGDTFKSKMILSELCTTEMSEEEADFSGFGALHDMLPESTTNEIKLELFEEPMDFEIKMEPPSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01221816;
90% Identity
iTF_01487891; iTF_01487898; iTF_01487899;
80% Identity
iTF_01487899;