Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050467.1:2159669-2167577[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.00011 0.0065 17.1 1.9 1 23 201 223 201 223 0.99

2 30 0.00012 0.0071 17.0 0.9 2 22 267 287 266 287 0.94

3 30 1e-05 0.00059 20.4 0.3 2 23 319 341 318 341 0.96

4 30 0.00075 0.043 14.5 0.2 1 23 390 413 390 413 0.96

5 30 0.035 2 9.3 0.0 1 23 427 449 427 449 0.94

6 30 0.029 1.7 9.5 0.5 2 23 485 507 484 507 0.95

7 30 9.4e-05 0.0054 17.4 1.8 2 23 552 574 551 574 0.97

8 30 0.00075 0.044 14.5 0.5 1 23 624 647 624 647 0.97

9 30 8.7e-05 0.0051 17.5 0.1 1 23 704 726 704 726 0.97

10 30 0.0082 0.48 11.3 3.4 2 23 738 759 737 759 0.96

11 30 0.22 13 6.8 1.6 2 23 771 792 770 792 0.95

12 30 0.0037 0.22 12.3 1.0 1 23 802 824 802 824 0.98

13 30 2.6 1.5e+02 3.4 7.0 1 23 853 875 853 875 0.90

14 30 0.0039 0.23 12.3 4.2 1 23 886 908 886 908 0.97

15 30 2e-05 0.0011 19.5 0.6 1 23 916 938 916 938 0.98

16 30 0.00057 0.033 14.9 0.8 2 23 958 980 957 980 0.97

17 30 0.4 23 5.9 1.3 1 20 998 1017 998 1020 0.85

18 30 0.37 21 6.1 3.6 1 23 1027 1049 1027 1049 0.96

19 30 0.34 20 6.2 2.1 2 23 1060 1082 1059 1082 0.95

20 30 0.026 1.5 9.7 0.2 2 23 1105 1126 1104 1126 0.95

21 30 5.9 3.4e+02 2.3 3.9 2 23 1169 1191 1168 1191 0.94

22 30 0.0039 0.23 12.3 3.5 1 23 1206 1228 1206 1228 0.96

23 30 0.76 44 5.1 4.1 5 23 1238 1256 1235 1256 0.94

24 30 0.012 0.68 10.8 0.8 2 23 1267 1289 1266 1289 0.95

25 30 0.1 5.9 7.8 1.9 2 23 1306 1324 1306 1324 0.91

26 30 0.17 10 7.1 2.2 2 21 1328 1347 1328 1348 0.93

27 30 0.35 20 6.1 1.8 2 23 1397 1418 1396 1418 0.94

28 30 0.0088 0.51 11.2 2.1 2 23 1429 1451 1428 1451 0.97

29 30 6.3 3.6e+02 2.2 0.4 3 23 1468 1485 1467 1485 0.76

30 30 0.051 3 8.8 4.4 2 21 1489 1508 1488 1509 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.00011	0.0065	17.1	1.9	1	23	201	223	201	223	0.99
2	30	0.00012	0.0071	17.0	0.9	2	22	267	287	266	287	0.94
3	30	1e-05	0.00059	20.4	0.3	2	23	319	341	318	341	0.96
4	30	0.00075	0.043	14.5	0.2	1	23	390	413	390	413	0.96
5	30	0.035	2	9.3	0.0	1	23	427	449	427	449	0.94
6	30	0.029	1.7	9.5	0.5	2	23	485	507	484	507	0.95
7	30	9.4e-05	0.0054	17.4	1.8	2	23	552	574	551	574	0.97
8	30	0.00075	0.044	14.5	0.5	1	23	624	647	624	647	0.97
9	30	8.7e-05	0.0051	17.5	0.1	1	23	704	726	704	726	0.97
10	30	0.0082	0.48	11.3	3.4	2	23	738	759	737	759	0.96
11	30	0.22	13	6.8	1.6	2	23	771	792	770	792	0.95
12	30	0.0037	0.22	12.3	1.0	1	23	802	824	802	824	0.98
13	30	2.6	1.5e+02	3.4	7.0	1	23	853	875	853	875	0.90
14	30	0.0039	0.23	12.3	4.2	1	23	886	908	886	908	0.97
15	30	2e-05	0.0011	19.5	0.6	1	23	916	938	916	938	0.98
16	30	0.00057	0.033	14.9	0.8	2	23	958	980	957	980	0.97
17	30	0.4	23	5.9	1.3	1	20	998	1017	998	1020	0.85
18	30	0.37	21	6.1	3.6	1	23	1027	1049	1027	1049	0.96
19	30	0.34	20	6.2	2.1	2	23	1060	1082	1059	1082	0.95
20	30	0.026	1.5	9.7	0.2	2	23	1105	1126	1104	1126	0.95
21	30	5.9	3.4e+02	2.3	3.9	2	23	1169	1191	1168	1191	0.94
22	30	0.0039	0.23	12.3	3.5	1	23	1206	1228	1206	1228	0.96
23	30	0.76	44	5.1	4.1	5	23	1238	1256	1235	1256	0.94
24	30	0.012	0.68	10.8	0.8	2	23	1267	1289	1266	1289	0.95
25	30	0.1	5.9	7.8	1.9	2	23	1306	1324	1306	1324	0.91
26	30	0.17	10	7.1	2.2	2	21	1328	1347	1328	1348	0.93
27	30	0.35	20	6.1	1.8	2	23	1397	1418	1396	1418	0.94
28	30	0.0088	0.51	11.2	2.1	2	23	1429	1451	1428	1451	0.97
29	30	6.3	3.6e+02	2.2	0.4	3	23	1468	1485	1467	1485	0.76
30	30	0.051	3	8.8	4.4	2	21	1489	1508	1488	1509	0.95

Sequence Information

Coding Sequence: ATGGCTCTCAAATTGGGAAAATGCAGGCTCTGCCTGAAGCTGGGCGACTTTTACTCAATATTTACCGTGGACAATGCCCTACAGTTGGCGGAAATGGTGATGGAATGCACGAGAGTCAAGGTATATGAAGGCGATGGATTGCCAGACAAAATCTGTACCGAGTGTGTGCAGAAGCTAAGTAGCGCTTACATATTTAAGCAGCAGTGCGAGAGAGCTGATCAAGAACTGAGGAGGAACTATGTCCCACCACCAGgCTTCAGTATCACCCCACCACCGCCTAACAGACAGAGCAGTGACTCTGCTTTCTCGACACATACCGACACCTCCAACCAGCTGTCCAAGCCGCCGTCCTCCGCCGACCAGACTCCCAACAACAGGGGTCGCAAACGCAGCCGTAGTCGCAGCATCGACGCCGCCTCTGTCGGCTCTCGAACACAAGACCTCCCCGCCAAACGCGTCCAAGAACTCAAAAACTCGCACAAAAAAAGACCTAGAGTTGACTCTCCTAACACATCCTATGCCGATTCCGACTATGAATACGACAATAGCGCCTCGCAATTCTCTATGGAAACCGATTCGGATGAACCACTGTTGGGTCCctataaatgtacaaaatgtgACAAGGTTTTCACGAAAATACGTAGTCGCGCGTCTCACATGCGCATTCATACTCGAGAAGCGTTAGGACAGAACGCAGTCGTAGACATACCTAGAGATGACTATGTGGATGAGCCAACAGGTGATGACTATGTGGACACATCTAGAGGTGAGGACGCTCTCGACGACGAGGACAAGTTGAGCTGTGAGAAGTGCGACAAAACATTCAAGTTGAAAATCATGCTGAAGCGACACATGTCCACATGCACCGGGAGACCGCCGCCTCCGACGGTGTCGCCACAGAAAGAGCTGCTGATATCTCTCCAGCCGATCGACCAAGTGCCGGTGGGGAAACTCGTGTGTGACATCTGCACGGCGAGGTTCAAGACGTTGGACAGTCTGAGGAAGCACATGCGGGTGATCCACGCCGCCGTGCCGAAGATCGATACGATAGTGCTGCCGAAAAACCCCGTGGCGATACCTTGCATGTTCTGTCGGAAGATCTTCGATGATTATTTCCTGCACACGGAACATTTCAACAAGTGTCCTGAGAAAAGGCCTGTGACGAGTTACGAGTGTCCGATGTGTGACAAGTCGATATCTCGTATTCAGAACTACCTGAGCCACTTGCGGGGCAGCCACTTCGAGCAGAAGCTGCCGGTGCGCGAGCAGCAGCCGGAGTTCGCGTGCCGCCTGTGCCCCAAGAAGCTGGCCTCGCAGGACCTGCTCGTGTCGCATCTGGCCGCACACATGTCCACCATTGATAACGAAAATGACGATAATTCCAGGGCCAGCACAGCAGATGACGCGGTCTCAGACACCAGCTACCAGGGCTACATGCCTCACGGGCCCAACAAGTGTCCCTATTGCATCAAATCCTTCTCATACAAAAAGGTCCTCGACAACCATATCGTCAAAGTTCATTCCAATGTCCCGGAACTGCCTTTAGAAGTCAAAGTGGAAGTCCCGCCCGATAAGAATCCTTCAACAAGTTTACTAACAGAAAAATACGCAGCAAGCGATTCGGAATCTAGTCAAGAGGAAGCGGAGGACCTCACCTGCGATATTTGCGAGAAGATGTTCTCCTACAAGCGGCTGCTGCTGCAGCACAAACGCACCAAACACAACATGAGCTCCGGACACAAGCGAGCGAAGATAAATCTCAAAGACTGTTCTGTGCGTTGCCTCATTTGCGACGTGGAGATGAAAGTCAGCGCCGTTAATGAGCACAATCAGAAGCATATTACTGCCAACATAAAGCCGAGGAACCTGTACACGTGTGCGCAGTGTGGAGAGAAGTTCAAGGCGTGCAGCGGTCTAGCGAACCACATCAAGCTGATCCACCGCTTGAAGCAGGTGCCGAAGCCGAAGGTGCCGAAGCTGCAGGGGGGGTCGGAGCTGGCGGATTTTTGCGAGGTCGTTGTGACGAAGACGGAGCCCCTGGACGACATCCAGAATCACAACGGCACGGAGGTTCCGTCGACCGCGGCGCCACTAATCAACCTGAGCGGGTTCACGTGCCCCATCTGCGGTAAGACGCTGGGCACGCTCATCTCGCTCAAGAGGCACGTCAACTGGCACTCCAACGTCGGCAACAACATCGAGAGCAAGGTCGAGTGCTTCGTTTGTAAAGAGACATTCCGCTTCAAACGTCACTACAGACTGCACATGAGCTTGCACTACAAGGACCCCAACATCGACCCGAAACACCTGACGTGTACCATCTGCAATCGCAAGAGTAAACATCTGCGCGCCGCCCTCGCTCACATGAACTTCCACAAGCAAACCCGATTCCAAAACAAAGACTACCAGTGCTCCATCTGCAAGCGAGTCTTCCAATACAGAAAAGTGTACCTCTCCCACATGGCGATCCACTACAAGCGAGGTGAAAGCATCCAGAACACTGTTGTCGGCGACATCTTACCTGAAAACGCGGACAAAACCGCCTTCGATGGAAGCCATACTTGCCATTTGTGCGGAAAGGTCTGCGACTCTGAAACCTCACTCAAATGTCACGTCACCTGGCACAAGTCCAAAACGTCGCTCTTCGGTAATAGACACGAATGTCATATCTGTCAAGTCCAGTTCACCAATAAGAGAAGATTAGAATATCACATTCGAGAACATTATGAGGATGAAAACGGTCCGTACAAGTGCACTATTTGCGGGAAAGGCTACATCGACGAGGAATATTTCAAACGGCATCTCAAAGGGcataattttgataatcaGTGTCACAAAAAGAGGATAGAGAAATTGAGAAAAGACAAGGTGAAGTGCCCCATTTGTACTCGGTTCTATCCGGATCTGCTGCATTTGATTAGGCATATTAAACGGACGCATCCGGAAAGTAAGATGATTAAAAACGATCCTGACGCGCCTCCGCCCATGTACTATTCGTGCAAGTTGTGCGCCAAAGTGTTCGTGGACCAGCGCCGGCTGCAGTGCCACGAGGAAGCTCACCTGAGGAAGCCAGAGTTCTTCAAATGCAAGTTCTGCGGCAAGAAAACGATATCCCTCAAAAGCCACAGGATCCACATCAAGGGGCATTTGACGACCAAGTTCCTGGACAATCCGCTGAAATGCACGCAATGCGACGACATGTTTATCAAGGGCTACGACCTGCACCACCACCTGCGCGACGCCCACAACATCGAGGAGACCTGGATCGCGGACCGCAATGAGCAGGCTCTGACCGGCCCGCTCAAGGACCTGCAGTGTTCCGTGTGTCTCAAGATCTTGGCCAGCAAGGGGAACTACGAGCGCCATCTCGATTACCACAACTCTCTGCGGTGCAACTATTGCTTCGACTATTTCAGCTCCCTGCGGTTCTTGGAGGGGCATCTGGCATTCAGTTGCGATAAGAAGAAGTTGATAGGCGACACCGAGCCCCATCCGAGGAAAATCAAATGCAACGTTTGCTACAAAGCTTTCCACTTGCAAGTCAAGTTGGACTGCCACTTGCGAACTCAGCACGACATCAAAGTCAACAAGGAGGCTTCCTCTGAAAGAAAAGACTTTGTGTGTGATTATTGCTTCAAGGTGTTCGAGAACGAGTATTGCTTGAACACTCACAAAATCTACCACCGCGTCATCGGATATTACGGCTGCATCTACTGTAACAGGAAATTCAACACGTTGACGTTGTATCGGAAGCATAAGAATCACCACTTCTCGCAACTGAATGTCGACAATCCTACCAAATGCGAACATTGCGACGAGACCTTCGTGGCCTTCCGCGAGATGATCAGCCACATGAAGGAAGTCCACAACGACGACAAGGAGTGGGTGACGATGCCCAAGGAAGTCATAGAAGAGGAATGCCCCATCTGCAAGAAAGTTTTCTATAATCTGCACCGCCACTTGGATTATCACGAGGAAAATAGGTGTAAGAAGTGCGGGGAATACTTCTACTCGCGGACGGACTACGACAACCATTTGTGCAGCATTGAGAGTGATGACGAGACCGCAGAGAGATGCGACGGGAGTTTGGAGTCGCAGTACCAAGAGTGTACCTTCTGCTTCAAGCCGATAACGCGGGTCAGTTCAGAGTTGAAGCATGTGAAGATACACAGGGGCTCGGGCTCCATATCCTGCCGCTTCTGCCCGCACAAGTTCAAAACGATGGACGCTTTCAACATCCACGCATTCTCGCACCGAAGTAGGAAATACAATAAGAAGCCAATAAAGTGCCGGAAATGCAACGAGCATTTCGTGAAATATGGGCCGTTCATTAAGCACATGAAAACAGTGCACAAGTCCACTCAGAAGATGCATTACCGGGCCATCGTGAAGGCGGAGCCCTGCGTGGTGTGTGGCGAAGACTTCCCCAATCTGCACAACCACTACCGGGCGCATCTGCAGAACCAATGCCAGAACTGTAAGAAGTACTTCACCTCTTCCAAACTGTTTTCGCGTCACCAGTGTGACGTGGAAGACGCCGATCCTTCTAAAGTGTTCACGTGCGATGAGAATCTCCTAGTCCTTATAAACACGTACATTCCCAAAGACGAAAAAGATGACGAGAAATACTACGGCCACGACGACCCGAACGAAGAAGAAGACGAACAAGAGGAAACTAGAGATTATATAAATTCGAGTGATATAAAGACGATTGTCGAGAGCCAAGACGAGGAGAGTCAAGAGGCGCCTGCGGTGGCGCCCGATCCGGACGAAAGGAGTCTCCACTTGATGGCGCAGTCGCCGATCATATCGGATGTCCTCTCGCTCTATCAGAACCAACAGGACGACGACGTCGTCCATCTCACTGATGACGACTCCATGGACATCGATGTCAGTATTCCTGTTATAACTATTGATTaa
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMVMECTRVKVYEGDGLPDKICTECVQKLSSAYIFKQQCERADQELRRNYVPPPGFSITPPPPNRQSSDSAFSTHTDTSNQLSKPPSSADQTPNNRGRKRSRSRSIDAASVGSRTQDLPAKRVQELKNSHKKRPRVDSPNTSYADSDYEYDNSASQFSMETDSDEPLLGPYKCTKCDKVFTKIRSRASHMRIHTREALGQNAVVDIPRDDYVDEPTGDDYVDTSRGEDALDDEDKLSCEKCDKTFKLKIMLKRHMSTCTGRPPPPTVSPQKELLISLQPIDQVPVGKLVCDICTARFKTLDSLRKHMRVIHAAVPKIDTIVLPKNPVAIPCMFCRKIFDDYFLHTEHFNKCPEKRPVTSYECPMCDKSISRIQNYLSHLRGSHFEQKLPVREQQPEFACRLCPKKLASQDLLVSHLAAHMSTIDNENDDNSRASTADDAVSDTSYQGYMPHGPNKCPYCIKSFSYKKVLDNHIVKVHSNVPELPLEVKVEVPPDKNPSTSLLTEKYAASDSESSQEEAEDLTCDICEKMFSYKRLLLQHKRTKHNMSSGHKRAKINLKDCSVRCLICDVEMKVSAVNEHNQKHITANIKPRNLYTCAQCGEKFKACSGLANHIKLIHRLKQVPKPKVPKLQGGSELADFCEVVVTKTEPLDDIQNHNGTEVPSTAAPLINLSGFTCPICGKTLGTLISLKRHVNWHSNVGNNIESKVECFVCKETFRFKRHYRLHMSLHYKDPNIDPKHLTCTICNRKSKHLRAALAHMNFHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESIQNTVVGDILPENADKTAFDGSHTCHLCGKVCDSETSLKCHVTWHKSKTSLFGNRHECHICQVQFTNKRRLEYHIREHYEDENGPYKCTICGKGYIDEEYFKRHLKGHNFDNQCHKKRIEKLRKDKVKCPICTRFYPDLLHLIRHIKRTHPESKMIKNDPDAPPPMYYSCKLCAKVFVDQRRLQCHEEAHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTTKFLDNPLKCTQCDDMFIKGYDLHHHLRDAHNIEETWIADRNEQALTGPLKDLQCSVCLKILASKGNYERHLDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEPHPRKIKCNVCYKAFHLQVKLDCHLRTQHDIKVNKEASSERKDFVCDYCFKVFENEYCLNTHKIYHRVIGYYGCIYCNRKFNTLTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMISHMKEVHNDDKEWVTMPKEVIEEECPICKKVFYNLHRHLDYHEENRCKKCGEYFYSRTDYDNHLCSIESDDETAERCDGSLESQYQECTFCFKPITRVSSELKHVKIHRGSGSISCRFCPHKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCNEHFVKYGPFIKHMKTVHKSTQKMHYRAIVKAEPCVVCGEDFPNLHNHYRAHLQNQCQNCKKYFTSSKLFSRHQCDVEDADPSKVFTCDENLLVLINTYIPKDEKDDEKYYGHDDPNEEEDEQEETRDYINSSDIKTIVESQDEESQEAPAVAPDPDERSLHLMAQSPIISDVLSLYQNQQDDDVVHLTDDDSMDIDVSIPVITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00012238;
90% Identity: iTF_00651980;
80% Identity: -