Pint006992.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050472.1:470028-475304[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-11 4e-08 33.1 0.0 4 39 172 208 169 212 0.90 2 4 9.7e-11 9.1e-08 32.0 0.2 3 39 225 261 223 264 0.90 3 4 2.1e-15 2e-12 46.9 0.1 2 45 279 323 278 323 0.96 4 4 1e-18 9.5e-16 57.5 0.1 1 45 330 375 330 375 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGCAACGGGGCAACGAAAATAAAACGCGAACCTCTTTCGGACGAAGACGACAGCAACCCGTTCGCTCATACCTACTTAGCCAAtcagCTACCTTCGCTGGGACAACACGTGAAGCCTGAACGTGGGAGCAGTCATGACGATAGTGTGCCGCAGATTCTGCATCATTTACAgTCCCAAGGACTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCCACGCCGGTCTGCGTGAAGCAAGAACCAACCGACGACCCGCCAGCAACCTCGCTCGAGACTTTGGAACCGGCTCCTCACGCTACGGGTGCCACGCTGCTCGACCGTCACATGTCCATGCTGTGCTCCGAAGCACCTGAATCGTCCGACTTCATGCCGCTGATGACTGTGAAAGACGAGCCAATGTCAGAGGGAGAACAACACCAGTACAGCGGGGAAGACACCAGCGACTCGTGCGGGCCGCCGGAGCCGCTGTCGAGGGGCAGCCCCAAGAGTTGGACTCAGAGGGACATGGACAACGCGCTCGAGGCGCTGAGGAAACACAACATGAGTCTTACTAAGGCGTCAGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGCCTGGGCATCGACACTCCCAAGCGCGAGGGCGCCGCCAAGTGCTGGAGCGACGCCGACCTCCGCGGCGCGCTGCGGGCGCTGCGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCCTATGGTATTCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCAGACTGGCGGCGCCGTTCAACGCAGCGCCCACGGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTGGACGCCGTGCGCCGCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCACAGTTCGGGATTCCTACCGGAACGCTGTACGGTCGCTGCAAACGCGAAGGCATCGAGCTGTCGCGCTCGAACCCCACGCCCTGGTCCGAGGACGCGATGGGCGAGGCGCTCGCTGCTGTCAGAGTGGGCCAAATGTCTATAAATCAAGCAGCAATTCACTACAACCTGCCGTATTCGTCCCTTTATGGAAGGTTCAAGAGATGCAAATACCAAACGCAGaatCTCCAACCGATGATGCAGCAAGCAGATTTCCAAAAGCAGGAAACGGAGCAGGTGTGCCAACCGCACGAGGTTTACTACCAACATCAGGGACAGTACATGCAACCTAACGAAATGATAGACATGCAAAACATTCAGAGTATTCAGATGTTTGACTACCAGAGTTACTATCAGAATGGAGTCAGTTGA
- Protein Sequence
- MPGNGATKIKREPLSDEDDSNPFAHTYLANQLPSLGQHVKPERGSSHDDSVPQILHHLQSQGLEELAPLAPAGPAATPVCVKQEPTDDPPATSLETLEPAPHATGATLLDRHMSMLCSEAPESSDFMPLMTVKDEPMSEGEQHQYSGEDTSDSCGPPEPLSRGSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKREGAAKCWSDADLRGALRALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALDAVRRGASSVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALAAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQNLQPMMQQADFQKQETEQVCQPHEVYYQHQGQYMQPNEMIDMQNIQSIQMFDYQSYYQNGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- iTF_00651651;
- 80% Identity
- -