Basic Information

Insect: Plemyria rubiginata
Gene Symbol: PRDM7
Assembly: GCA_963576535.1
Location: OY754912.1:2184782-2193364[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.1 8.6e+02 0.6 0.0 26 52 424 450 419 452 0.84

2 11 0.0022 19 6.0 0.1 20 45 472 497 460 504 0.80

3 11 0.046 3.9e+02 1.8 0.2 21 44 501 524 496 528 0.84

4 11 0.0045 38 5.0 0.1 21 44 529 552 521 556 0.88

5 11 0.00055 4.6 7.9 0.1 21 44 557 580 553 584 0.90

6 11 0.0066 56 4.5 0.3 21 46 585 610 581 613 0.89

7 11 0.00088 7.4 7.3 0.2 21 44 613 636 609 640 0.90

8 11 0.0059 50 4.6 0.1 21 44 641 664 637 668 0.90

9 11 0.00017 1.4 9.5 0.1 21 45 669 693 664 697 0.90

10 11 0.037 3.1e+02 2.1 0.1 22 44 698 720 693 723 0.86

11 11 0.007 59 4.4 0.0 21 48 725 752 720 759 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.1	8.6e+02	0.6	0.0	26	52	424	450	419	452	0.84
2	11	0.0022	19	6.0	0.1	20	45	472	497	460	504	0.80
3	11	0.046	3.9e+02	1.8	0.2	21	44	501	524	496	528	0.84
4	11	0.0045	38	5.0	0.1	21	44	529	552	521	556	0.88
5	11	0.00055	4.6	7.9	0.1	21	44	557	580	553	584	0.90
6	11	0.0066	56	4.5	0.3	21	46	585	610	581	613	0.89
7	11	0.00088	7.4	7.3	0.2	21	44	613	636	609	640	0.90
8	11	0.0059	50	4.6	0.1	21	44	641	664	637	668	0.90
9	11	0.00017	1.4	9.5	0.1	21	45	669	693	664	697	0.90
10	11	0.037	3.1e+02	2.1	0.1	22	44	698	720	693	723	0.86
11	11	0.007	59	4.4	0.0	21	48	725	752	720	759	0.88

Sequence Information

Coding Sequence: ATGTCTCATCGCAATTTGCGGCGCAAGCCGCGGATAAGTTATTACGAGCCAGAAGAACCCGATTTGGACGAATATGTGTTTTGCGAAAAATGTGGCGACTATGTGTACGAGTACTGCTCCATCCATGGACCTCTGCTAGTCATACCAGATGACAAGGTTCCCGCCAATCCTAATGTCCCACCATACGTCCCTCGCGCTGCGCTGACCATTCCTCACGTGTTCCTGCATATCACATATTCCATCATACCAGGTGCTGGATTGGGAGTATTTACATCAATGGCGCTTCCTTCGGGGGTGCGATTTGGCCCATACGTGGGTCAACGAACTGATGTCGTCGACTCATCTTACTGTTGGCAGATTTACGATAAGAACCGCAAGCCACTTCACTGCATCGACGCCGCAGATGGCAACAAGTCTAACTGGATGCGATACGTCAACTGCGCGAGACACTGGAGGGAACAGAACCTTGTGGCTTACCAATACCAGGGAGAACTATACTACAGAACTATCAAAATAATTCCTCGGTTCACGGAGCTCATGGTTTTCTACGGCAGCGAGTTCGCATGTGAACTGGACGTTGATCTCGGCAAGTACAACTCTCCTGCTGGATACGCGCAGAAATTTGGTGCACCAGTatctaaaaaaagaaaaccgaACGATAACatgacaataaaaatacacgAAGAGGAAATACAAACTGCGAATACCGAATCAACAGCTACCGATGCGCCGACATCCGCTCCAAGTGCTATTGTCAAGGACATAACTAGCGAAACTCTGACTGGGCAAGTAGCTCTCACTACAATAGGCCCAGAACAAGTCGAAGTCACTCTTAGCAAAATTACAAAACCAACTGCTTCTAAGCTTACAAAAACTAAGAACCATGCAGAAACTAAGAAGAAAGTAACAAAGAACAATGACAAAGAagaatttaaaatcaaaaaggCATCAAAAGTTGCTCAGCCCCAGTACACGATTGACAAACCAAAATCTCCCATTTTTATGCAGGAAAGTAAAAACCATACCATTAATTTGCATACGCTAGCGGAGTCTAAGGCCAATCTTgccaaacaaaacaacaacttTCTGGACTTGTACATATACTGTGATAGTTGCAACAAAAGGTGTTCAACAAAGCAAGAGCTTCAAAAACATCTCAGATTTCATGATCCAAGCCGAGAGTATGCTTGTGAGGTTTGCAAACTAAGGTACACTTCATTGTCTAATCTAGTTTATCATCGTAAAATTCACATAAATGATAATCTTAACAAATGTAAAATAAGCAATGCAATATATACTTCAAACGATAATTTAAAAGAACACTTGAGAACTCACACCAGCGAAAAGCCGTGCGAAGTATGCAATGCCAGATTTACTTGTATCGGTAGTGTAAAAAAACATATGAGAACTCACACCGGTGAAAAGCCGTATGCCTGCGAAGTATGCAATGCAAGATTTAATCAAATCAGTCATTTAAAAACACATATGAGAACGCACACCGGTGAAAAGCCGTATGCCTGCAAAGTATGCAATGCAAGATTTAATCGAATCAGTCATTTAAAAACACATATGAGAACTCACACCGGTGAGAAACCGTATGCCTGCGAAGTATGTAATGCAAGATTTAATCACATCAGTAATTTAAAAACACATATGAGAACTCACACCGGAGAAAAGCCATACACCTGCGAAGTATGCAATGCaagatttaataaaatcagTAATTTAAAAACACATATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAGTATGCAATGCAAGATTTACTCAAAACTGTGTTTTAAAAACACATATGAGAATTCACACCGGCGAAAAGCCATACACCTGCGAAGTATGCAATGCAAGATTTAATCAAATcagtagtttaaaaaatcatATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAGTATGCAATGCAAGATTTAATCACATCAGTAATTTAAAAACACATATGAGAACGCACACCGGTGAAAAGCCGTATGCCTGCGAAGTGTGCAATGCAAGATTTAATCAAatcagtaatttaaaaaaacatatgaGAACGCACACCGGAGAAAAGCAATATGCCTGCGAAGTATGCAATGCAAGATTTAATCAAAtcagtagtttaaaaaaacatatgaGAACTCACACCGGTGAGAAGCCGTATGGCTGTGAGATATGCGATGAAAAATTCAGCCATAGCATAAGTTTGAAAAAACATCTTGTGAAAATACATCTTGGAGATAACCAAAAGCCAACAGCGTAA
Protein Sequence: MSHRNLRRKPRISYYEPEEPDLDEYVFCEKCGDYVYEYCSIHGPLLVIPDDKVPANPNVPPYVPRAALTIPHVFLHITYSIIPGAGLGVFTSMALPSGVRFGPYVGQRTDVVDSSYCWQIYDKNRKPLHCIDAADGNKSNWMRYVNCARHWREQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPAGYAQKFGAPVSKKRKPNDNMTIKIHEEEIQTANTESTATDAPTSAPSAIVKDITSETLTGQVALTTIGPEQVEVTLSKITKPTASKLTKTKNHAETKKKVTKNNDKEEFKIKKASKVAQPQYTIDKPKSPIFMQESKNHTINLHTLAESKANLAKQNNNFLDLYIYCDSCNKRCSTKQELQKHLRFHDPSREYACEVCKLRYTSLSNLVYHRKIHINDNLNKCKISNAIYTSNDNLKEHLRTHTSEKPCEVCNARFTCIGSVKKHMRTHTGEKPYACEVCNARFNQISHLKTHMRTHTGEKPYACKVCNARFNRISHLKTHMRTHTGEKPYACEVCNARFNHISNLKTHMRTHTGEKPYTCEVCNARFNKISNLKTHMRTHTGEKPYACEVCNARFTQNCVLKTHMRIHTGEKPYTCEVCNARFNQISSLKNHMRTHTGEKPYACEVCNARFNHISNLKTHMRTHTGEKPYACEVCNARFNQISNLKKHMRTHTGEKQYACEVCNARFNQISSLKKHMRTHTGEKPYGCEICDEKFSHSISLKKHLVKIHLGDNQKPTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01219963;
90% Identity: iTF_01219963;
80% Identity: iTF_01219963;