Basic Information

Insect: Plemyria rubiginata
Gene Symbol: PRDM7
Assembly: GCA_963576535.1
Location: OY754912.1:2184782-2193364[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00071 0.046 14.7 4.5 2 23 368 389 367 389 0.96

2 14 0.00027 0.018 16.0 0.6 1 23 395 417 395 417 0.97

3 14 0.045 2.9 9.0 0.1 10 23 432 445 425 445 0.93

4 14 0.032 2.1 9.4 1.6 2 23 450 471 449 471 0.97

5 14 2.9e-06 0.00019 22.2 1.7 1 23 477 499 477 499 0.98

6 14 2.7e-06 0.00018 22.3 2.9 1 23 505 527 505 527 0.98

7 14 2.3e-06 0.00015 22.5 1.7 1 23 533 555 533 555 0.98

8 14 1.3e-06 8.6e-05 23.3 1.3 1 23 561 583 561 583 0.99

9 14 8.8e-05 0.0057 17.5 1.4 1 23 589 611 589 611 0.98

10 14 9.9e-07 6.4e-05 23.7 1.0 1 23 617 639 617 639 0.99

11 14 2.3e-06 0.00015 22.5 1.7 1 23 645 667 645 667 0.98

12 14 4.6e-07 3e-05 24.7 0.7 1 23 673 695 673 695 0.98

13 14 1.4e-06 8.8e-05 23.2 0.7 1 23 701 723 701 723 0.98

14 14 0.00013 0.0086 17.0 0.8 3 23 731 752 729 752 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00071	0.046	14.7	4.5	2	23	368	389	367	389	0.96
2	14	0.00027	0.018	16.0	0.6	1	23	395	417	395	417	0.97
3	14	0.045	2.9	9.0	0.1	10	23	432	445	425	445	0.93
4	14	0.032	2.1	9.4	1.6	2	23	450	471	449	471	0.97
5	14	2.9e-06	0.00019	22.2	1.7	1	23	477	499	477	499	0.98
6	14	2.7e-06	0.00018	22.3	2.9	1	23	505	527	505	527	0.98
7	14	2.3e-06	0.00015	22.5	1.7	1	23	533	555	533	555	0.98
8	14	1.3e-06	8.6e-05	23.3	1.3	1	23	561	583	561	583	0.99
9	14	8.8e-05	0.0057	17.5	1.4	1	23	589	611	589	611	0.98
10	14	9.9e-07	6.4e-05	23.7	1.0	1	23	617	639	617	639	0.99
11	14	2.3e-06	0.00015	22.5	1.7	1	23	645	667	645	667	0.98
12	14	4.6e-07	3e-05	24.7	0.7	1	23	673	695	673	695	0.98
13	14	1.4e-06	8.8e-05	23.2	0.7	1	23	701	723	701	723	0.98
14	14	0.00013	0.0086	17.0	0.8	3	23	731	752	729	752	0.94

Sequence Information

Coding Sequence: ATGTCTCATCGCAATTTGCGGCGCAAGCCGCGGATAAGTTATTACGAGCCAGAAGAACCCGATTTGGACGAATATGTGTTTTGCGAAAAATGTGGCGACTATGTGTACGAGTACTGCTCCATCCATGGACCTCTGCTAGTCATACCAGATGACAAGGTTCCCGCCAATCCTAATGTCCCACCATACGTCCCTCGCGCTGCGCTGACCATTCCTCACGTGTTCCTGCATATCACATATTCCATCATACCAGGTGCTGGATTGGGAGTATTTACATCAATGGCGCTTCCTTCGGGGGTGCGATTTGGCCCATACGTGGGTCAACGAACTGATGTCGTCGACTCATCTTACTGTTGGCAGATTTACGATAAGAACCGCAAGCCACTTCACTGCATCGACGCCGCAGATGGCAACAAGTCTAACTGGATGCGATACGTCAACTGCGCGAGACACTGGAGGGAACAGAACCTTGTGGCTTACCAATACCAGGGAGAACTATACTACAGAACTATCAAAATAATTCCTCGGTTCACGGAGCTCATGGTTTTCTACGGCAGCGAGTTCGCATGTGAACTGGACGTTGATCTCGGCAAGTACAACTCTCCTGCTGGATACGCGCAGAAATTTGGTGCACCAGTatctaaaaaaagaaaaccgaACGATAACatgacaataaaaatacacgAAGAGGAAATACAAACTGCGAATACCGAATCAACAGCTACCGATGCGCCGACATCCGCTCCAAGTGCTATTGTCAAGGACATAACTAGCGAAACTCTGACTGGGCAAGTAGCTCTCACTACAATAGGCCCAGAACAAGTCGAAGTCACTCTTAGCAAAATTACAAAACCAACTGCTTCTAAGCTTACAAAAACTAAGAACCATGCAGAAACTAAGAAGAAAGTAACAAAGAACAATGACAAAGAagaatttaaaatcaaaaaggCATCAAAAGTTGCTCAGCCCCAGTACACGATTGACAAACCAAAATCTCCCATTTTTATGCAGGAAAGTAAAAACCATACCATTAATTTGCATACGCTAGCGGAGTCTAAGGCCAATCTTgccaaacaaaacaacaacttTCTGGACTTGTACATATACTGTGATAGTTGCAACAAAAGGTGTTCAACAAAGCAAGAGCTTCAAAAACATCTCAGATTTCATGATCCAAGCCGAGAGTATGCTTGTGAGGTTTGCAAACTAAGGTACACTTCATTGTCTAATCTAGTTTATCATCGTAAAATTCACATAAATGATAATCTTAACAAATGTAAAATAAGCAATGCAATATATACTTCAAACGATAATTTAAAAGAACACTTGAGAACTCACACCAGCGAAAAGCCGTGCGAAGTATGCAATGCCAGATTTACTTGTATCGGTAGTGTAAAAAAACATATGAGAACTCACACCGGTGAAAAGCCGTATGCCTGCGAAGTATGCAATGCAAGATTTAATCAAATCAGTCATTTAAAAACACATATGAGAACGCACACCGGTGAAAAGCCGTATGCCTGCAAAGTATGCAATGCAAGATTTAATCGAATCAGTCATTTAAAAACACATATGAGAACTCACACCGGTGAGAAACCGTATGCCTGCGAAGTATGTAATGCAAGATTTAATCACATCAGTAATTTAAAAACACATATGAGAACTCACACCGGAGAAAAGCCATACACCTGCGAAGTATGCAATGCaagatttaataaaatcagTAATTTAAAAACACATATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAGTATGCAATGCAAGATTTACTCAAAACTGTGTTTTAAAAACACATATGAGAATTCACACCGGCGAAAAGCCATACACCTGCGAAGTATGCAATGCAAGATTTAATCAAATcagtagtttaaaaaatcatATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAGTATGCAATGCAAGATTTAATCACATCAGTAATTTAAAAACACATATGAGAACGCACACCGGTGAAAAGCCGTATGCCTGCGAAGTGTGCAATGCAAGATTTAATCAAatcagtaatttaaaaaaacatatgaGAACGCACACCGGAGAAAAGCAATATGCCTGCGAAGTATGCAATGCAAGATTTAATCAAAtcagtagtttaaaaaaacatatgaGAACTCACACCGGTGAGAAGCCGTATGGCTGTGAGATATGCGATGAAAAATTCAGCCATAGCATAAGTTTGAAAAAACATCTTGTGAAAATACATCTTGGAGATAACCAAAAGCCAACAGCGTAA
Protein Sequence: MSHRNLRRKPRISYYEPEEPDLDEYVFCEKCGDYVYEYCSIHGPLLVIPDDKVPANPNVPPYVPRAALTIPHVFLHITYSIIPGAGLGVFTSMALPSGVRFGPYVGQRTDVVDSSYCWQIYDKNRKPLHCIDAADGNKSNWMRYVNCARHWREQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPAGYAQKFGAPVSKKRKPNDNMTIKIHEEEIQTANTESTATDAPTSAPSAIVKDITSETLTGQVALTTIGPEQVEVTLSKITKPTASKLTKTKNHAETKKKVTKNNDKEEFKIKKASKVAQPQYTIDKPKSPIFMQESKNHTINLHTLAESKANLAKQNNNFLDLYIYCDSCNKRCSTKQELQKHLRFHDPSREYACEVCKLRYTSLSNLVYHRKIHINDNLNKCKISNAIYTSNDNLKEHLRTHTSEKPCEVCNARFTCIGSVKKHMRTHTGEKPYACEVCNARFNQISHLKTHMRTHTGEKPYACKVCNARFNRISHLKTHMRTHTGEKPYACEVCNARFNHISNLKTHMRTHTGEKPYTCEVCNARFNKISNLKTHMRTHTGEKPYACEVCNARFTQNCVLKTHMRIHTGEKPYTCEVCNARFNQISSLKNHMRTHTGEKPYACEVCNARFNHISNLKTHMRTHTGEKPYACEVCNARFNQISNLKKHMRTHTGEKQYACEVCNARFNQISSLKKHMRTHTGEKPYGCEICDEKFSHSISLKKHLVKIHLGDNQKPTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01220316;
90% Identity: iTF_01220316;
80% Identity: iTF_01220316;