Prub000893.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754905.1:7156389-7166930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7 4.5e+02 2.1 3.6 1 21 159 179 159 180 0.94 2 13 0.0019 0.12 13.3 0.3 2 20 194 212 193 216 0.94 3 13 0.3 19 6.4 0.7 2 23 256 277 255 277 0.96 4 13 2.3 1.5e+02 3.6 3.5 3 21 284 303 283 304 0.88 5 13 0.02 1.3 10.1 0.3 2 20 379 397 378 399 0.89 6 13 0.00039 0.025 15.5 1.7 1 23 407 430 407 430 0.97 7 13 1.9e-05 0.0012 19.6 1.2 1 23 452 474 452 474 0.98 8 13 8e-07 5.2e-05 23.9 1.9 1 23 481 503 481 503 0.98 9 13 2.9e-07 1.9e-05 25.3 1.4 3 23 517 537 515 537 0.96 10 13 1.3e-06 8.4e-05 23.3 0.8 1 23 543 565 543 565 0.99 11 13 1.8e-06 0.00011 22.9 2.8 2 23 572 593 571 593 0.96 12 13 1.6e-07 1e-05 26.2 1.5 1 23 599 621 599 621 0.99 13 13 0.0027 0.18 12.8 0.1 1 23 627 649 627 649 0.97
Sequence Information
- Coding Sequence
- ATGGCATCCACAAATGAAaagattgaaataaaaattgaaaaactgTGTCGAACATGCCTGTCAAAGGAGAATGAATTAAACTctttatttgatgtaatagttGGAGATGAAACTCTGGATTTTGTGGTGACTGCAATCACAGGACTAAAGATTCGAAAAGGAGATGGGTTGCCTACAACAATTTGCTGTGTGTGCAGGGACAAAGCAGAGAAAgcttttgaatttaaaaagaagTCTCAAGAAGCTTATAACTCCCTAAAAGACCTTATAAAGGATGAAAAAAGCCTAATATTTGACTATGATGATAATTCTACTCAGAAATCTATTGATTTTAAAACAGAAGATTCACAATGCAGTGATCACGATGATTATTCTGACGCCGATTACTGTTTGCCTATCAAAAATGGACCACTTGATATTAGAAATATGCAAATAAAGGTGAAAGTTAAACATGAAGGTTCCAGTCGAGAGTATTATGAATGTAAAAAATGCTGTCTAATATTCCAAACTCGAGCTAAATATCAAGAGCACAGGAAAAGAAAGTGTGTTAAAGTTGAATTTGATGACCAGAGCGGGACACATTGCCCTATTTGTGGCACAAGCTATGATGGTGCTAGCAGTCTGTCAAACCATATGTGGCAATTTCATGCTGACGTAATGGGTCCGAAGAAAAGGGGACGACCTAAAAAACCTATGACTTCAGCCATACTAAGTAAATTGACCGAAAATGGGTTCTTTATAAAGACTCTTCACGggaaaaaaacaaaatgcgGCTTCTGCAAACAGCAAGTTGATGCCAAAGAAGATTTGATGTCACACATGTTTAAACATAGCGatattaaaattttatgctGCATTCAATGTAAGAAGATGTATgtgaagaaaaaaaactttgatgCACACCAATGTGAGGATTCAACTAAAACAGCCTCAAGCATTGCTGAAGAAAATGCACCTGGCAGAGCAGTTGGGAATGCGCCTATTTCGACGGAAATGTATTTACAGGAACTATTTGATCCAGATTGGGAAAcgAATGCTGGTTTCATTCAAGTTTGCAGCTCATGCAGCGCCGTGTTTTTAACGGATGACGACCTTCAAGGGCATAACGATGCAGAGCATCCGGAACTATCTTTAAGATGTAATCATTGCAGCAAGGTATTCGCTTCGGTGAAAACGGCTGCCCGCCACAGGGCTATGTGCAAAGATATTGATAGAACACATAGGTGCTCAACTTGTGGCCTCAAGTTTGCCTATGAGATATCACTAAACAAGCACATACTGCGATACCACCAGGGAGAAAGGGTTTTTGTTGCACATCACGGAAAACCGTCTAAAATCATGGACAATGTACAGTATCAATGCGATACGTGCAATAAGAAGTTCCAAAGGAAAGAAGCGCTCGCTAAGCATGCAAAGTTGCACATGCCCAATCAAAAGCTATTCGAATGTGAAATATGCCAACGGAAGTTCAATAGGAGTGACAATTTGCGTACCCACAAACGCATTCACGACGCTGACCGACCGAAACCGCCGACTAACAACCATCTGTGCCTCTATTGTGGCAGAGGATTTTCCAACTCTTCAAACCTCATTGTGCACATGCGAAGGCATACCGGCGAGAAGCCTTACAAGTGTGACTTTTGTGAAAAAGGTTTTCCAAGGTCTTCTGATCTCATGGTCCATAGGCGCTCTCATACTGGAGAGAAGCCTTGTGTTTGCCGTCTTTGCGGAAAAGCGTTCTCTCGCAGCAACAAGTTGTCTCGTCACATGCGCGTGCACACGGGACAGAGGCCGTACAAATGCACGTACTGCGACAAAGCTTTCTCGCAGAGCAACGACTTGACTCTCCATGTGCGCCGCCACACCGGCGACCGCCCCTACATATGCAATGTCTGCGGAGACAGGTTTATACAAGGCACTGCATTGCAGAATCATCGCCGAGCGCATGGACATTATACTGAGCCGGCGCCTCCTGCTTTAACGAATCCAGTGCAAGCCATTACGTACACGGTATCTAATATCACACATCCTGATGACTCGCATTTATCTAACACTATCGCGTCGATATAA
- Protein Sequence
- MASTNEKIEIKIEKLCRTCLSKENELNSLFDVIVGDETLDFVVTAITGLKIRKGDGLPTTICCVCRDKAEKAFEFKKKSQEAYNSLKDLIKDEKSLIFDYDDNSTQKSIDFKTEDSQCSDHDDYSDADYCLPIKNGPLDIRNMQIKVKVKHEGSSREYYECKKCCLIFQTRAKYQEHRKRKCVKVEFDDQSGTHCPICGTSYDGASSLSNHMWQFHADVMGPKKRGRPKKPMTSAILSKLTENGFFIKTLHGKKTKCGFCKQQVDAKEDLMSHMFKHSDIKILCCIQCKKMYVKKKNFDAHQCEDSTKTASSIAEENAPGRAVGNAPISTEMYLQELFDPDWETNAGFIQVCSSCSAVFLTDDDLQGHNDAEHPELSLRCNHCSKVFASVKTAARHRAMCKDIDRTHRCSTCGLKFAYEISLNKHILRYHQGERVFVAHHGKPSKIMDNVQYQCDTCNKKFQRKEALAKHAKLHMPNQKLFECEICQRKFNRSDNLRTHKRIHDADRPKPPTNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICNVCGDRFIQGTALQNHRRAHGHYTEPAPPALTNPVQAITYTVSNITHPDDSHLSNTIASI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638850; iTF_00638817; iTF_01429227; iTF_01429257; iTF_00119815; iTF_00856905; iTF_00361867; iTF_00267438; iTF_01183156; iTF_00377327; iTF_00663331;
- 90% Identity
- -
- 80% Identity
- -