Basic Information

Insect: Lampropteryx suffumata
Gene Symbol: -
Assembly: GCA_948098915.1
Location: OX402544.1:16672891-16716875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 0.93 11.0 0.3 3 20 194 211 193 215 0.95

2 12 0.0011 0.099 14.0 2.6 2 23 255 276 254 276 0.95

3 12 8.7 7.5e+02 1.8 0.0 2 23 351 373 350 373 0.86

4 12 0.023 2 10.0 0.5 2 20 379 397 378 399 0.89

5 12 0.00039 0.034 15.5 1.7 1 23 407 430 407 430 0.97

6 12 1.5e-05 0.0013 20.0 0.8 1 23 452 474 452 474 0.98

7 12 7.5e-06 0.00065 20.9 4.0 1 23 481 503 481 503 0.98

8 12 3e-07 2.5e-05 25.3 1.4 3 23 517 537 515 537 0.96

9 12 1.3e-06 0.00011 23.3 0.8 1 23 543 565 543 565 0.99

10 12 1.3e-06 0.00011 23.3 2.9 2 23 572 593 571 593 0.96

11 12 5.5e-07 4.7e-05 24.5 1.5 1 23 599 621 599 621 0.99

12 12 0.0028 0.24 12.8 0.1 1 23 627 649 627 649 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	0.93	11.0	0.3	3	20	194	211	193	215	0.95
2	12	0.0011	0.099	14.0	2.6	2	23	255	276	254	276	0.95
3	12	8.7	7.5e+02	1.8	0.0	2	23	351	373	350	373	0.86
4	12	0.023	2	10.0	0.5	2	20	379	397	378	399	0.89
5	12	0.00039	0.034	15.5	1.7	1	23	407	430	407	430	0.97
6	12	1.5e-05	0.0013	20.0	0.8	1	23	452	474	452	474	0.98
7	12	7.5e-06	0.00065	20.9	4.0	1	23	481	503	481	503	0.98
8	12	3e-07	2.5e-05	25.3	1.4	3	23	517	537	515	537	0.96
9	12	1.3e-06	0.00011	23.3	0.8	1	23	543	565	543	565	0.99
10	12	1.3e-06	0.00011	23.3	2.9	2	23	572	593	571	593	0.96
11	12	5.5e-07	4.7e-05	24.5	1.5	1	23	599	621	599	621	0.99
12	12	0.0028	0.24	12.8	0.1	1	23	627	649	627	649	0.97

Sequence Information

Coding Sequence: ATGGCATCAAAAGATGATAAAATAGAAATAAAGATTGAAAAATTGTGTCGAACATGTTTATCAAAAGACAATCAACTGAATTCCCTATTTGACGTGATTGTTGGAGAAGTATCTCTCGATGTATTAGTGACTGCTATTACGGGATTGAAGATTCGCAAAGGAGATGGACTGCCCCCTACAATTTGCTGTGAATGCAAAGATAAAGCTGAGAAAGCCTTTGATTTTAAAAAGAAGTCTGAGGAAGCATATAATTCCCTGAAAGGCTTTTACAAGGATGAAAAAAACGATATAATTGTATATGATGACTCTGCTAAGCGATCAATTGATTTTAAGACCGAAGACTCTGTATTCAGTGAGCATGATGATTTTACTGACGTCGATTATTGTATGCCTCTTAAAAACGGACCAGATGATTTGAATAAAATTGATATCAAGGTGAAGGTCAAGCATGAAAGTTCAAATCGTGAATATTTTGAATGTAAAAAATGCTGTCTAATTTTCCAAACTCGAGCAAAATATCAAGAACACAAGAAAAATAAATGTGTCAAAGTTGAATATGAAGATCAGAGTGGAGCGCATTGCCCTATTTGCGGTACAAGTTATGACGGTGCTAACAGCCTATCAAATCATATGTGGCAGTTTCATGCTGACCTCATGGGAACCAAGAAAAGGGGTCGACCTAAAAAAGCTATGACTTCGACAATACTTAGTAAACTATCGGAAAATGGATTTTTTATAAAGACTGTTCAAGGAAAAAAAACTAAATGTGGATTTTGCAAAGAGCATTTTATTACCAAAGAAGATCTAACCACACACATGTTTGAACATAGCGATGTTAAAGTTTTAAGCTGCGTTTTATGCAAGAAAATGTATCTGAAAAAGAAGAAATTTGATACACACCCATGTGTCGATGTTGCAAATAAAACTGCCTCAGGTAGAACTGGAAGGGAAACATCTGACAGTGCTTATAAGAAAGGGTCCTCAGCAACGGAGATGTTTTTACAGGACCTTTTAGATCCAGATTGGGAAACGAACGCTTCTATCATTCAAGTGTGTGGAGCTTGCAGTGCTGTGTTCCTGACAGAAGCAGATCTGAATAACCATCTAGATGCTGAGCATCCAGAATTGTCTTTAAGATGTAATCATTGtaccaagGTATTCGCCTCGGTAAAGACGGCTGCTCGCCACAGGACTATGTGCAAAGATATTGATAGAACACACAGATGCTCCACCTGTGGTCTCAAATTTGCCTATGAAATATCACTCAACAAACACATACTGAGATACCATCAGGGAGAAAAAGTAACTATTGCACATCAAGGAAAACAATCCAAGTCCGCCGACAACGTACAGTATCAATGCGATACTTGCAATAAGATGTTTCAAAGGAAAGAAGCTCTTGCCAAACATGCTAAGCTACACATGCCGAACCAAAAGCTGTTTGAATGTGACATATGCCACAGAAAGTTCAACAGGACTGACAATTTGCGTACACATAAACGGATTCATGACGCCAACCGGCCCAAGCCGCCAACTAGCAACCACCTGTGCCTGTACTGCGGGAGAGGTTTCTCAAACTCTTCAAACCTCATCGTCCACATGCGCAGACATACCGGCGAGAAGCCGTACAAGTGCGATTTTTGCGAAAAAGGTTTTCCTAGGTCTTCCGATCTTATGGTCCACAGGAGATCACATACTGGCGAGAAACCATGCGTATGTCGTATGTGCGGAAAAGCATTCTCACGTAGCAACAAACTGTCGCGTCACATGCGTGTGCACACAGGTCAAAGGCCGTACAAGTGTACGTACTGCGAAAAGGCATTCTCTCAGAGCAACGATTTGACACTGCACGTGCGACGGCATACGGGGGACCGTCCATACATTTGTAACGTCTGCGGGGATAGGTTCATTCAGGGCACTGCATTACAGAACCATCGCCGAGCTCATGGGCATTTCAGCGAACCGCCTCCACCTGGCCTAACAAACCAAGTGCAAGCTCTGACATACGGGATAGCTAACATCACGCATCACGACGACTCGCATTTATCTAACACTATAACATCTATCTAA
Protein Sequence: MASKDDKIEIKIEKLCRTCLSKDNQLNSLFDVIVGEVSLDVLVTAITGLKIRKGDGLPPTICCECKDKAEKAFDFKKKSEEAYNSLKGFYKDEKNDIIVYDDSAKRSIDFKTEDSVFSEHDDFTDVDYCMPLKNGPDDLNKIDIKVKVKHESSNREYFECKKCCLIFQTRAKYQEHKKNKCVKVEYEDQSGAHCPICGTSYDGANSLSNHMWQFHADLMGTKKRGRPKKAMTSTILSKLSENGFFIKTVQGKKTKCGFCKEHFITKEDLTTHMFEHSDVKVLSCVLCKKMYLKKKKFDTHPCVDVANKTASGRTGRETSDSAYKKGSSATEMFLQDLLDPDWETNASIIQVCGACSAVFLTEADLNNHLDAEHPELSLRCNHCTKVFASVKTAARHRTMCKDIDRTHRCSTCGLKFAYEISLNKHILRYHQGEKVTIAHQGKQSKSADNVQYQCDTCNKMFQRKEALAKHAKLHMPNQKLFECDICHRKFNRTDNLRTHKRIHDANRPKPPTSNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRMCGKAFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLTLHVRRHTGDRPYICNVCGDRFIQGTALQNHRRAHGHFSEPPPPGLTNQVQALTYGIANITHHDDSHLSNTITSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01219986;
90% Identity: -
80% Identity: -