Prub018326.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- sip1
- Assembly
- GCA_963576535.1
- Location
- OY754926.1:7545894-7557374[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-62 1.1e-57 196.2 3.5 4 275 371 624 368 624 0.96 2 2 0.27 3.4e+03 -2.2 0.0 71 114 634 679 628 681 0.69
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAAGTTATGCGTTTTGAGATCACCGACCATGATTTGGACAATGAATTTAACTTCAATAGACCCCGTGGAAAAAATAAGAAGGAACATCAAATATACGGTGTGTGGGCTAAAGACAGTGATGAAGAAGATAATGAGGACAACATCCGTCAAAGGACCCGAAAGGCTAAAGACTATTCTGCACCAATTGGCTTTGTTATGGGTGGGGTGCAACAAGCAGGCaagaaaaaagaagacaaaAAAGAACTAGAACTAACAGAACCCTCCACCTCTCGACCCAAGTTTGCTCCAGAAAGTTCCGATGATGATGAGCAGCCTAGCTTGCCAGCCGAGACCGAAACAGCAGGCATCAGGAGAAAGGGACAGGGCATGCGGACGGCCAACTTGGGTGGCAGTGTGGGAACTTGGGAGAAGCACACCAAGGGTATTGGTGCCAAGTTGCTTTTGCAGATGGGTTACAAACCAGGTAAAGGCCTGGGTAAGGACCTCCAGGGTATTTCAGCACCGGTGGAAGCCACTGTCAGGAGAGGCCGAGGTGCTATTGGAGCTTATGGACCTGAAAAAGCGGCTCAAAAAGCAAAGAAAGAAGAGGAGAAACGCCTCAAGGAGAAAGAAGAGCAAGAGAAAGAGACCTCTGAGAAGTCGTACAACTGGAAGAAGTCTCACAAGGGGCGGTACTTCTACCGAGACTCAGCAGATGTGATACAAGAGGGTAAACCCACGATGCATACTATGGCCAGCAGCGAGCTATCTCGCGTGCCAGTGATCGACATGACTGGTAAGGAGAAGCGCGTCCTTAGTGGATACCACGCGCTACGGGCCGCGGCCCCTCGCTTCGAACACGAGCCGCGTCGCAAGTGCGAACACTTCGCTGCTCCGGAACTGGCGCACAATCTTACCCTGATGGTTGAATGCTGTGAGCAGGATATAATCCAGAACGCGCGCGAGCTGAACGCCGCCGAGGATGAGATCGTGGTGCTGGAGAGAGACCTACAAGAGTGTGAACTTGGCCTGAAAGAGCAAGACGACATCATAGCCAAGGTGCAAGCAATCCTGCTAAGAGTGGAGGCCCTCGACCGTCCTGACCTGTCTCTGGAGGCGGCCTACGAAGTACTGGCTGATTTACAGGAGTCCTACCCCCTGGAGTACGAGATGTTCGGCTTAGGTTCCATCGCTGGCAACATCGTCAGTCCTCTGCTGAGCGCTCTGCTGGCGCCGTGGCAGCCGTTGGAAGCGCCGGAGGATCCCATCCCTACCTTCCTAAAATGGCGGCCGTTGCTAACTGAGGAAGCGTACAATAGTCTGCTGTGGCAGCATTTCGTGCCGCATCTCACTACCGCTTCAGAAGTATGGAACCCTCGCGTCCCGGAGCCGATGCTGCGCGCAGTGAACGCGTGGAGCGAGGCCTGTCCGCCGTGGGTGGCCGGCGCCGTGATGACGCGGTGCGTGGTGCCGCGCGTGCTGGCTGCCGTGAGGACCTGGGACCCGACGCACGACACGCAGCCGGTGCACTGCTGGGTGCTGCCGTGGCATGACCTGGCCGGTGCAGCACTAGCTAGCAGTGTGTACCCGTTAATCCGGTCCCGGCTTGCCTCTGCGCTCTCCGCGTGGCATCCCGCCGACGGGTCGGCGCGCGGCGTGCTGGCGGCGTGGCGCGGCGCCTGGCGGGGCGCGCTTACCGCGCTCCTACACCATCATATCGTGCCCAAGCTGGAGCACTGTCTGCACCACTCGCAGATACATCTTGTCGGACAACAGAACAcGGCATGGCTCTGGTGCGTTGATTGGCTGGACTTGCTAGGCGCGCCCACCGTGGCGGCTATAGCCAGCCGGGCATTGCTACCTCGCTGGCTAGCGGCCCTCGCAGCCTGGCTGAACGCTAACCCGGCCCATGCTACTGTACTCAACTCCTACACTGAATTCAAGAAAATGTTCCCCGAAGAAGTACTAAAAGAGCCCGCAGTCCGGGACTCCTTCCGCAAAGCTCTCGACATGATGAACCGAAGCACCGACATCGACACAGTAGAGGCGCCCCCTCCCCCGCGATTCACCCCCGGCGACGCCCCCCCTCCGCCGCGATTCACCGACGTCAAAGAAACTTCCAGAATAGCCGACGCCCTTGCATCAGCCACACAGCAAAAATCCTTCTCAGAACTACTCGAGTCTCGGTGTATGGAAAAAGGTATCACCTTCGTGCCTCTAGTCGGCAAGAATAGGGAAGGAAGACCTATTTATAAGATTGGGGATAAACAGTGTTATGTTATAAGGAATGTGATTATGTATTCGGACGACGCAGGTCGAAATTTCGCACCGATCAGTATAGATCGACTCTTGAAAATGGTTGAAGAATAA
- Protein Sequence
- MSDDEVMRFEITDHDLDNEFNFNRPRGKNKKEHQIYGVWAKDSDEEDNEDNIRQRTRKAKDYSAPIGFVMGGVQQAGKKKEDKKELELTEPSTSRPKFAPESSDDDEQPSLPAETETAGIRRKGQGMRTANLGGSVGTWEKHTKGIGAKLLLQMGYKPGKGLGKDLQGISAPVEATVRRGRGAIGAYGPEKAAQKAKKEEEKRLKEKEEQEKETSEKSYNWKKSHKGRYFYRDSADVIQEGKPTMHTMASSELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRKCEHFAAPELAHNLTLMVECCEQDIIQNARELNAAEDEIVVLERDLQECELGLKEQDDIIAKVQAILLRVEALDRPDLSLEAAYEVLADLQESYPLEYEMFGLGSIAGNIVSPLLSALLAPWQPLEAPEDPIPTFLKWRPLLTEEAYNSLLWQHFVPHLTTASEVWNPRVPEPMLRAVNAWSEACPPWVAGAVMTRCVVPRVLAAVRTWDPTHDTQPVHCWVLPWHDLAGAALASSVYPLIRSRLASALSAWHPADGSARGVLAAWRGAWRGALTALLHHHIVPKLEHCLHHSQIHLVGQQNTAWLWCVDWLDLLGAPTVAAIASRALLPRWLAALAAWLNANPAHATVLNSYTEFKKMFPEEVLKEPAVRDSFRKALDMMNRSTDIDTVEAPPPPRFTPGDAPPPPRFTDVKETSRIADALASATQQKSFSELLESRCMEKGITFVPLVGKNREGRPIYKIGDKQCYVIRNVIMYSDDAGRNFAPISIDRLLKMVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170615;
- 90% Identity
- iTF_00638660;
- 80% Identity
- -