Pnir042204.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- rdx
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010000005.1:308016-317905[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-35 5.1e-32 112.2 0.9 4 109 234 337 231 338 0.96 2 2 4 4.3e+03 -0.2 0.0 80 109 340 369 336 370 0.86
Sequence Information
- Coding Sequence
- ATGGCGACGACGACGTTAACGCGTGTCTTTTTCGCATGTTTCAGGCTTTCCGTGAGCGACTGTGCGCCTCAGACGTCGCGGGTGAGCTCGAACTTGCACAGCAGCAGTAGCATGGCGGTGAGCCGTGTGCCGAGCCCCCCGCCACCGGAAGTAAACACTCCCGTCGCCGAAAACTGGTGTTACACGCAGGTGAAGGTGGTCAAGTTCAGTTACATGTGGACGATAAATAACTTCAGCTTCTGCCGCGAGGAAATGGGTGAAGTTTTAAAGTCGTCCACGTTTTCTGCAGGAGCAAACGATAAACTCAAATGGTGCCTACGAGTGAATCCAAAAGGCTTGGACGAGGAAAGTAAAGACTATCTGTCTCTGTATCTACTTCTCGTGTCATGCAACAAATCGGAAGTGAGGgccaaattcaaattttctattcttaatgCCAAAAGAGAAGAAACCAAAGCGAtggAAAGCCAGCGAGCGTACAGGTTTGTTCAGGGGAAAGACTGGGGCTTTAAAAAGTTCATAAGGAGAGATTTCCTTTTGGACGAAGCGAATGGTTTGCTGCCAGATGACAAACTCACGATATTCTGTGAGGTATATACCTTTGTTAGCGTCGTAGCTGATAGTGTTAATATCTCCGGCCAGAGTAATACGATACAATTCAAGGTGCCTGAATGCCGATTACCCGATGACCTTGGACTCCTCTTCGAAAACCAAAAATTCAGCGATGTCACGCTGACCGTATGTGGCAAAGAGTTCCAGGCGCACAAAGCGATATTGGCCGCGCGTAGTCCAGTGTTTTCGGCCATGTTCGAACACGAAATGGAAGAGAGAAAGCAGAACCGAGTTGACATTACCGATGTTGAACAAGACGTATTCAGAGAAATGTTGCGATTCATATATACAGGAAAGGCCGCGAATCTTGAAAAGATGGCAGACGACCTGCTCGCAGCTGCAGACAAATACGCGCTCGAAAGGCTGAAGGTCATGTGCGAAGAAGCACTTTGCACGAGTCTAGCCATAGATAACGCAGCCGATATCCTTATTCTTGCCGATCTCCACAGTGCAGATCAGCTGAAGGCGCAAGCTATAGATTTCATAAACACACATGCGACAGACGTGATGGAGACAACAGGATTCAAGTCGATGGTAAGTTCGCATCCCAACCTGATAGCAGAGGCTTTTCGGGCGCTTGCCACCCAACAAATTCCACCTATCGGACCGCCACGGAAACGAGTTAAACAGAGCTGA
- Protein Sequence
- MATTTLTRVFFACFRLSVSDCAPQTSRVSSNLHSSSSMAVSRVPSPPPPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTIFCEVYTFVSVVADSVNISGQSNTIQFKVPECRLPDDLGLLFENQKFSDVTLTVCGKEFQAHKAILAARSPVFSAMFEHEMEERKQNRVDITDVEQDVFREMLRFIYTGKAANLEKMADDLLAAADKYALERLKVMCEEALCTSLAIDNAADILILADLHSADQLKAQAIDFINTHATDVMETTGFKSMVSSHPNLIAEAFRALATQQIPPIGPPRKRVKQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769768;
- 90% Identity
- iTF_00633709;
- 80% Identity
- iTF_00708584; iTF_00845328;