Prob023303.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052028.1:11376490-11393436[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-11 1.7e-07 32.7 0.0 1 39 296 335 296 339 0.90 2 4 5.3e-12 1.2e-08 36.3 0.1 2 39 351 388 350 391 0.94 3 4 1.9e-18 4.4e-15 56.9 0.0 2 45 406 450 405 450 0.97 4 4 2.2e-18 5e-15 56.7 0.1 1 42 457 499 457 500 0.97
Sequence Information
- Coding Sequence
- ATGAGTGGGTTGAGGGTGGTCGATACGCGGCGGCTTTCCCCACCCCCACCCCCGTTTTTCCCGCGGGCGTTTTCGCCTCTGTCGCTGCTGAAAACTGCGGATCAGCTGAAGATCAAGGGCCTTTGCGAGGTCCCGGAAAGCAGGGAAGGGCCGGCTTCGGTGAGCTTGACGTCGCCTTCGCACGAGCCTGGTGCCGGGGCAAGGATAAATTTCGCCAAAATCAAGAGGCACCATCCAAAGTACAAACGAGTCAGGACGAATTTCGAATCTCTAGACAGTGATTCTCTGCACAACAACGATCACGGCTTGGAGTTTCGAGACGAAAAAGAGAGCCACGGGGACTGGCCGGTCGAAGATGAGGAGTGCGCGGAATCCGCGACAGTATCAGCAACAACGTCAGCGTCAGCAGCAATAGTTTCGGACAGTTGCCAACGCGAAAGCAATAACGGTAACGTCGCAACAAACAACAATAACGGTGACATGTTTTGTCAAACAGGCCTTGGGCATTATAATCACCATCCGGACCCTGGCGATGTCGACCTACCGCCGGAGACCCAGCCAACGCCGCCGAGCGCCACCCTCGTCGGCACCACCATCACGCACCTCAGGGATCCCGATCACCATTCCACTGAAATCCAAAATTGCGACAACGTCACGAAAATCAAATTGGAGACGTTGCACACGATGGACTCGTCGGACACCATCGACATCGACAGTCACATGTCAGACCATGCGAGCGTGTGTTCCAAGACTGAGGATAACATGATGACCATCACGCCCGAGTTCCTAGGACTGCTCCCACCGGGGAGTGGCTCGCCCTCGGAATCGGGGGACAACAATTCCAGGGGACACTCGAGTACGCACCATCACGGCTCCAAGTCCTGGACCCAGGAGGACATGGACGGTGCGTTGGACGCTCTGAGGAACCATGACATGAGCCTAACCAAAGCTTCGGCAACTTTTGGAATCCCCTCGACGACGCTTTGGCAACGCGCTCACCGACTAGGCATAGACACTCCGAAAAAGGATGGCCCAACCAAGTCTTGGAGCGACGAGAGCTTGAATAATGCCCTGGAGGCTCTCAGGACTGGCACGATATCGGCGAACAAAGCTTCCAAGGCCTTTGGCATACCCTCGAGTACATTGTACAAAATCGCGAGGAGGGAAGGCATACGGCTTGCGGCGCCGTTCAACGCGTCCCCGACGACGTGGTCGCCCGCGGATCTGGACAGGGCGCTCGAGGCCATCAGGTCCGGGCAAACATCGGTGCAGCGGGCGAGCACCGAGTTCGGTATACCCACAGGAACGTTGTACGGGAGGTGCAAAAGAGAGGGCATCGAGCTCAGCAGAAGCAACCCGACACCATGGAGCGAAGACGCCATGACAGAGGCTCTAGAAGCCGTGAGGTTGGGACATATGAGTATTAATCAAGCGGCAATTCATTACAATCTTCCCTATTCTTCCCTGTACGGTCGATTCAAGAGAGGAAAGTACGAAGAACCCGTAGGCAACGAAATGTCTCAGGACGGCATGTCCAGTCCGCATTTCCACCAGAGCCCAACTCAGAACCTTTCGTCCTCCATCCCCGATCAAATGCCTTACCAAGGCAGCTGA
- Protein Sequence
- MSGLRVVDTRRLSPPPPPFFPRAFSPLSLLKTADQLKIKGLCEVPESREGPASVSLTSPSHEPGAGARINFAKIKRHHPKYKRVRTNFESLDSDSLHNNDHGLEFRDEKESHGDWPVEDEECAESATVSATTSASAAIVSDSCQRESNNGNVATNNNNGDMFCQTGLGHYNHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDNVTKIKLETLHTMDSSDTIDIDSHMSDHASVCSKTEDNMMTITPEFLGLLPPGSGSPSESGDNNSRGHSSTHHHGSKSWTQEDMDGALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDGMSSPHFHQSPTQNLSSSIPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_01213236;
- 80% Identity
- -