Pequ015983.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- -
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010007845.1:5522-11180[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-11 9.2e-08 32.7 0.0 1 39 285 324 285 328 0.90 2 4 3.4e-12 6.7e-09 36.4 0.1 2 39 340 377 339 380 0.94 3 4 1.2e-18 2.4e-15 57.0 0.0 2 45 395 439 394 439 0.97 4 4 1.4e-18 2.8e-15 56.8 0.1 1 42 446 488 446 489 0.97
Sequence Information
- Coding Sequence
- ATGGAGTATTGCTTTTTAACTGAATTTGGGTACGATTTTTGTTTGCAGTCGTTGCTAAAAACTGCGGATCAGCTGAAGATCAAGGGTCTTTGCGAGGTTCCAGAGAGCAGGGAAGGTCCGGCTTCGGTGAGCTTGACGTCGCCGACGCACGAACCTGgagcgaaaataaatttcgctAAGATTAAGAGGCACCATCCTAAGTACAAACGGGCCAAGACGAATTTTGAGTCGCACGACAGTGATTCTCGGCATCACAAGGAGCGtgactcgaattttcgaaacgaaaaagagAGCCACGGGGACTGGCCGGTCGAAGATGAGGAGTGCGCGGAATCCGCGACAGCATCAGCAACAGCGTCAGCGTCAGCAACAGCAGCAATAGTTTTGGACAGTTGCCAACGCGAAAGCAATAACGGTAACGTCGCAACAAATAACAACAACGGTGACATGTTTTGTCACACAGGCCTGGGGCATTACGGCCACCACCCGGACCCGGGCGATGTCGACCTGCCGCCCGAGACGCAGCCCACGCCGCCGAGCGCCACCCTCGTCGGCACCACCATCACCCACCTCAGGGATCCTGACCACCATTCCACGGaaattcaaaattgcgacAACGTCACGAAAATCAAATTGGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGTCATATGTCGGATCATGCGAGCGTGTGTTCCAAGACCGAGGACAATATGATGACCATCACGCCTGAGTTCCTGGGCCTGCTGCCACCCGGGAGTGGGACGCCCTCGGAGTCGGGGGACAACAACTCCAGGGGGCACTCGAGTACGCACCATCACGGATCCAAGTCCTGGACCCAGGAAGACATGGACGGGGCGTTGGACGCTTTGAGAAACCATGACATGAGTCTCACTAAAGCTTCTGCAACTTTTGGAATCCCTTCGACGACGCTTTGGCAACGCGCGCACCGACTAGGCATAGATACTCCCAAGAAAGACGGGCCGACCAAGTCGTGGAGCGACGAGAGCTTGAACAATGCGCTGGAGGCGCTCAGGACCGGCACAATATCGGCGAACAAAGCTTCCAAGGCCTTCGGCATACCCTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGTATTCGACTGGCGGCCCCATTCAACGCGAGTCCCACGACGTGGTCGCCCGCGGATCTAGACAGGGCACTCGAAGCCATAAGATCTGGGCAAACGTCGGTGCAAAGGGCGAGCACCGAGTTCGGCATACCCACGGGCACGTTGTACGGGAGGTGCAAACGGGAGGGCATCGAGCTCAGCAGGAGCAATCCGACGCCGTGGAGCGAAGACGCCATGACCGAGGCTCTCGAGGCTGTGAGATTGGGACACATGAGTATTAATCAAGCAGCGATTCATTACAACCTTCCTTACTCTTCACTGTACGGTCGTTTCAAGAGAGGAAAGTACGAAGAACCCGTAGGCAATGAAATGTCCCAAGATGGCATGTCGAGCCCGCACTTCCACCAGAGCCCAAGTGAGAACCATTCGTCCTCCATCCCCGATCAAATGCCTTACCAGGGCAGCTGA
- Protein Sequence
- MEYCFLTEFGYDFCLQSLLKTADQLKIKGLCEVPESREGPASVSLTSPTHEPGAKINFAKIKRHHPKYKRAKTNFESHDSDSRHHKERDSNFRNEKESHGDWPVEDEECAESATASATASASATAAIVLDSCQRESNNGNVATNNNNGDMFCHTGLGHYGHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDNVTKIKLETLHTMDSSDTIDIDSHMSDHASVCSKTEDNMMTITPEFLGLLPPGSGTPSESGDNNSRGHSSTHHHGSKSWTQEDMDGALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDGMSSPHFHQSPSENHSSSIPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_01214692;
- 80% Identity
- -