Pign033009.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010000412.1:3458648-3459298[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-16 1.9e-12 50.0 0.1 7 72 6 69 2 72 0.94
Sequence Information
- Coding Sequence
- ATGAGCTTAGAACAAAAAGATTTTACATTGGCAAAAGGATGGATAAGAGATGAAATTGTAAGAAAAAATGGTGTAAACAAAGGAAAAACAGAAATTTATATAAGGTCCCCTAATGGGAAAGTTTTCAGGTCAAAGAAGGAATTAGAAGTTTATCTACTAATTAATAAACTTCCTCATAAAATTGGTGATTTTTACTTTACTACAAAAGGGTATACAAATAACAATGCAATGATCAAAATATCAACTACTGATAATAGCCTGGATTGTAATGATTCTCTCAAAATTGAGGTTACaacagaaaattataaaacagctcCCGAAAAATTTTTTGAATCAATTTCTATCCAAACGGATTGCAATGCTAATGCATTTACGACAATCACTGAACTTTTGAGCACAGACTGGATAACAGACCAGACCTTGTTAAAATATTTTGACTTACCTAATAACATTTTCCTCACTTCTAAGACTTTTCTTATACTAAATCCTCTAATTGGACATGCTGCTAAATGTATTGATGACTTCAACCACTTTCTGGATCctttaaaactgaaaaacgaaAATACCCTGTTTATACCAGTGAATGACGCTAATTTACGGACTCTGTGGAAGGCTCTCACTGAATCTGCTAATATATTCAAAGCACAGTAA
- Protein Sequence
- MSLEQKDFTLAKGWIRDEIVRKNGVNKGKTEIYIRSPNGKVFRSKKELEVYLLINKLPHKIGDFYFTTKGYTNNNAMIKISTTDNSLDCNDSLKIEVTTENYKTAPEKFFESISIQTDCNANAFTTITELLSTDWITDQTLLKYFDLPNNIFLTSKTFLILNPLIGHAAKCIDDFNHFLDPLKLKNENTLFIPVNDANLRTLWKALTESANIFKAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210585;
- 90% Identity
- iTF_01210590;
- 80% Identity
- -