Pign007860.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010000089.1:10249062-10249661[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-18 1.4e-14 56.8 0.1 7 72 10 73 6 76 0.94
Sequence Information
- Coding Sequence
- atggatAAAACAATAAGCTTAGAACAAAAAGATTTTACATTGCCTAAAGGATGGATAAGAGATGAAATTGTAAGAAAAAATGGTGTAAACAAAGGAAAAACAGACATTTATATAAGGTCCCCTAATGGGAAAGTTTTCAGGTCAAAGAAGGAATTAGAAGCTTATCTACTAATTAATAAACTTCCTCATAAAATTGGTGATTTTTACTTTACTACAAAAGGGTATACAAATAACAATGCAATGATCAAAATATCAACTATTGATAATAGCCTGGATTGTAATGATTCTCTCAAAATTGAggttacaacaaaaaattctaaaacagCTCCGGAAAAATTTTTTGAATCAATTTCTAGCCAAACGGATTGCAATGCTAATGCATTTACGACAATCACTGAACTTTTGAGCACAGACTGGATAACAGACCAGACCTTGTTAAAATATTTTGAGTTACTTAATAACATTTTCCTCACTTCTAAGACTTTTATTATACTAAATCCTCTAATTGGACATGCTATTAAATGTATTGATGACTTCAATCCACTTTCTGGATCCTTTGGAACTGAAAAACAAAGATACCTTGTTTATACCAGTGAATGA
- Protein Sequence
- MDKTISLEQKDFTLPKGWIRDEIVRKNGVNKGKTDIYIRSPNGKVFRSKKELEAYLLINKLPHKIGDFYFTTKGYTNNNAMIKISTIDNSLDCNDSLKIEVTTKNSKTAPEKFFESISSQTDCNANAFTTITELLSTDWITDQTLLKYFELLNNIFLTSKTFIILNPLIGHAIKCIDDFNPLSGSFGTEKQRYLVYTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210585;
- 90% Identity
- iTF_01210600; iTF_01210584; iTF_01210593; iTF_01210585;
- 80% Identity
- -