Ppul037839.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plagodis pulveraria
Gene Symbol
-
Assembly
GCA_963890685.1
Location
OY982968.1:13565991-13586013[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.018 17.1 0.1 3 23 136 156 135 156 0.97
2 19 9.5e-07 0.00016 23.6 1.2 1 23 162 184 162 184 0.99
3 19 5.9e-06 0.00099 21.1 2.7 1 23 190 212 190 212 0.99
4 19 4.1e-06 0.00068 21.6 2.6 1 23 227 249 227 249 0.98
5 19 5.1e-05 0.0085 18.1 0.8 1 23 264 286 264 286 0.98
6 19 5.4e-05 0.009 18.0 3.1 1 23 301 323 301 323 0.98
7 19 3.8e-07 6.3e-05 24.8 1.5 1 23 338 360 338 360 0.99
8 19 0.00017 0.028 16.5 2.8 1 23 366 388 366 388 0.98
9 19 0.00019 0.032 16.3 0.0 1 23 395 417 395 417 0.97
10 19 1.2e-05 0.002 20.1 2.1 1 23 423 445 423 445 0.99
11 19 0.038 6.4 9.1 1.8 1 23 452 474 452 474 0.98
12 19 6.4e-07 0.00011 24.1 2.3 1 23 480 502 480 502 0.99
13 19 0.16 27 7.1 1.8 1 23 509 531 509 531 0.98
14 19 3.1e-06 0.00052 21.9 1.6 1 23 537 559 537 559 0.99
15 19 0.0005 0.083 15.0 0.7 1 23 566 588 566 588 0.99
16 19 2.9e-06 0.00048 22.0 1.9 1 23 594 616 594 616 0.98
17 19 0.0021 0.35 13.0 0.3 1 20 622 641 622 644 0.93
18 19 0.00011 0.018 17.1 0.9 2 23 651 672 650 672 0.96
19 19 3.7e-06 0.00062 21.7 1.4 1 23 678 701 678 701 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAAATCAAAGCTGAACCGATGAGTTTTTACTCATCACATCAACACATACACACGGGTCCCTCGACCATAGTCCGGCCAGAGTCAAACCACCCCATCATCAACATGAACCAGCACCATTTGTCTCACCCATCGCACCAGGAGGACTCAAAGGACAGTTTGATAGTACAACAACAATTACAGCACCAACAGGATCTCATGGAACAACATCAGCAGCAGGAGATGCAACAACAACAGGATGACGAGTTGAGCTTTAAAGGAATGGATGATGAAGGAGTTGACATGGATATGGATGGAAGACAATGTTCACAGGGTATGGGAGTGGACATGGGATCAGTGACTAAAATGGAAGTACCAAACGGAGGACCAAACACCCCACGTTCAAAGCCCCAGGCCTGTAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCTGGAAACAAGCCTTTTCAATGCACAGTTTGCGACGCGGCATTCTGCCGCAAGCCGTACTTAGAAGTTCATATGCGAACTCACACGGGCGAAAGGCCCTTCCAATGTGATTTGTGCCTAAAGCGTTTTACGCAGAAGTCCAGCCTTAACACGCACAAACGCGTGCACACAGATGAGCACATGCACGCGTTGATGGCGAAGGACCGGCCCTACAAGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGATCACAGACGCGCGCTGCTGGCTAAGGACCGCCCCTACCAGTGCGGCATCTGCTATATGCGATTCACCCAGAAGTCGAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGTCACGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTCGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGGCCGTTCGCGTGCGGGCAATGCCCGGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATTCATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCAGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAACGGACGCACTCAGTACAAGGCCGCCCCTTCCAGTGCCTGTCCTGTCCGGCCGCCTTCACCTGCAAGCAGTATCTCGAGATCCATAACCGCACGCACACCGGCGAGCGCCCCTATCAGTGCGATGTCTGCCTTAAGAAATTCGCGCAAAAGTCTACTCTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCTTACCAATGCATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCACACAGGAGAACGTCCCTTCGAGTGCGATGTCTGTTACAAACGCTTTACGCAGAAATCCACGCTCAACATTCACAAGAGAATACACACCGGTGAACGTCCTTACGCTTGTGATATCTGTCAGAAACGTTTTGCGGTGAAGAGTTATGTTACAGCTCACAGATGGTCCCACGTGGCCGACAAGCCGTTGAACTGCGATCGTTGCTCGATGACGTTCACGTCGAAGGCTCAGTTTGCACTCCATATCCGCACGCACGCGACGGGCCCTTGTTACGAATGCAGCGTTTGCGGACGCACTTTTGTGCGAGACAGCTATCTTATACGGCATCACAACCGCGTGCACCGTGAGAACAATCACAGCAACCTATCAGCGAACAGTATAGGCAACCTCAGCAGCGTCGCCACCAACACTAACAACGGCAACTACGACTCGCCCGGCGTCTGTGATTTAAGCTTCGCACCGATGATGAGCCGGTACAATATGACGTCGCAGGGCACTCAAGTGTCGATGCAAGACACGCAAAGCAAGATGTCGGCAATGTCGCCACAATCCATCGCTTCTATTTCATCACCCCCTCCCCCGCATACACCAACGCCGCAGCCCCAAATGTCGAACCAGATGCTCATTGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHQHIHTGPSTIVRPESNHPIINMNQHHLSHPSHQEDSKDSLIVQQQLQHQQDLMEQHQQQEMQQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVTKMEVPNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMHALMAKDRPYKCDLCQMRFTQSSSLNRHKKIHTEDHRRALLAKDRPYQCGICYMRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKKFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKAQFALHIRTHATGPCYECSVCGRTFVRDSYLIRHHNRVHRENNHSNLSANSIGNLSSVATNTNNGNYDSPGVCDLSFAPMMSRYNMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSNQMLIAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00649330;
80% Identity
iTF_01208511;