Pdol037201.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plagodis dolabraria
Gene Symbol
-
Assembly
GCA_963854805.1
Location
OY978457.1:13750142-13763126[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.018 17.2 0.1 3 23 98 118 97 118 0.97
2 19 9.8e-07 0.00016 23.6 1.2 1 23 124 146 124 146 0.99
3 19 6.1e-06 0.001 21.1 2.7 1 23 152 174 152 174 0.99
4 19 4.2e-06 0.00069 21.6 2.6 1 23 189 211 189 211 0.98
5 19 5.3e-05 0.0087 18.2 0.8 1 23 226 248 226 248 0.98
6 19 5.6e-05 0.0092 18.1 3.1 1 23 263 285 263 285 0.98
7 19 3.9e-07 6.4e-05 24.9 1.5 1 23 300 322 300 322 0.99
8 19 0.00017 0.029 16.6 2.8 1 23 328 350 328 350 0.98
9 19 0.0002 0.033 16.4 0.0 1 23 357 379 357 379 0.97
10 19 1.2e-05 0.002 20.2 2.1 1 23 385 407 385 407 0.99
11 19 0.039 6.5 9.1 1.8 1 23 414 436 414 436 0.98
12 19 6.6e-07 0.00011 24.2 2.3 1 23 442 464 442 464 0.99
13 19 0.16 27 7.2 1.8 1 23 471 493 471 493 0.98
14 19 3.2e-06 0.00053 22.0 1.6 1 23 499 521 499 521 0.99
15 19 0.00051 0.084 15.1 0.7 1 23 528 550 528 550 0.99
16 19 3e-06 0.00049 22.1 1.9 1 23 556 578 556 578 0.98
17 19 0.0022 0.36 13.1 0.3 1 20 584 603 584 606 0.93
18 19 0.00011 0.019 17.1 0.9 2 23 613 634 612 634 0.96
19 19 3.8e-06 0.00063 21.8 1.4 1 23 640 663 640 663 0.97

Sequence Information

Coding Sequence
ATGAACCAGCACCATTTGTCTCACCCCTCGCACCAGGAGGACTCAAAGGACAGTTTGATAGTACAACAACAATTACAGCACCAACAGGATCTCATGGAACAACATCAGCAGCAGGAGATGCAACAACAACAGGATGATGAGTTAAGCTTTAAAGGAATGGATGATGAAGGAGTTGACATGGATATGGATGGAAGACAATGTTCACAGGGTATGGGAGTGGACATGGGATCAGTGACTAAAATGGAAGTACCAAACGGAGGACCAAACACCCCACGTTCAAAGCCCCAGGCCTGTAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCTGGAAACAAGCCTTTCCAATGCACAGTTTGCGACGCAGCATTCTGCCGCAAGCCGTACTTAGAAGTTCATATGCGAACTCACACGGGCGAAAGGCCCTTCCAATGTGATTTGTGCCTAAAGCGTTTTACGCAGAAGTCCAGCCTTAACACACACAAACGTGTGCACACAGATGAGCACATGCACGCGTTGATGGCGAAGGACCGGCCCTACAAGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGATCACAGACGCGCGCTGCTGGCTAAGGACCGCCCCTACCAGTGCGGCATCTGCTATATGCGATTCACCCAGAAGTCGAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGGGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGTCACGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTCGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGGCCGTTCGCGTGCGGGCAATGCCCGGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATTCATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCAGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAACGGACGCACTCAGTACAAGGCCGCCCCTTCCAGTGCCTGTCCTGTCCGGCCGCCTTCACCTGCAAGCAGTATCTCGAGATCCATAACCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGATGTCTGCCTTAAGAAATTCGCGCAAAAGTCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCACACAGGAGAACGTCCCTTCGAGTGCGATGTCTGTTACAAACGCTTTACGCAGAAATCTACGCTCAACATTCACAAGAGAATACACACCGGTGAACGTCCTTATGCTTGTGATATCTGTCAGAAACGTTTTGCAGTGAAGAGTTATGTGACAGCTCACAGATGGTCCCACGTGGCCGACAAGCCGTTGAACTGCGACCGTTGCTCGATGACGTTCACGTCGAAGGCTCAGTTTGCACTTCACATCCGCACGCATGCGACGGGCCCTTGTTACGAGTGCAGCGTGTGCGGACGCACTTTTGTGCGGGACAGCTATCTTATACGGCATCACAACCGCGTGCACCGTGAGAACAATCACAGCAACCTATCAGCGAACAGCATAGGCAACCTCAGCAGTGTCGCCACCAACACTAACAACGGCAACTACGACTCGCCCGGCGTCTGTGATTTGAGCTTCGCACCGATGATGAGCCGGTACAATATGACATCGCAGGGCACTCAAGTGTCGATGCAAGACACGCAAAGCAAGATGTCGGCCATGTCTCCCCAATCCATCGCTTCTATTTCATCACCCCCTCCCCCGCATACACCAACGCCGCAGCCCCAAATGTCGAACCAGATGCTCATTGCCGACTGA
Protein Sequence
MNQHHLSHPSHQEDSKDSLIVQQQLQHQQDLMEQHQQQEMQQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVTKMEVPNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMHALMAKDRPYKCDLCQMRFTQSSSLNRHKKIHTEDHRRALLAKDRPYQCGICYMRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKKFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKAQFALHIRTHATGPCYECSVCGRTFVRDSYLIRHHNRVHRENNHSNLSANSIGNLSSVATNTNNGNYDSPGVCDLSFAPMMSRYNMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSNQMLIAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00649330;
80% Identity
iTF_01209550;