Basic Information

Insect: Pieris rapae
Gene Symbol: RREB1
Assembly: GCA_905147795.1
Location: LR990602.1:7020496-7038680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.12 9.1 7.1 0.4 1 23 86 109 86 109 0.95

2 11 0.016 1.2 9.9 0.1 1 23 290 312 290 312 0.97

3 11 0.00084 0.065 13.9 0.4 1 23 321 343 321 343 0.99

4 11 0.00052 0.04 14.5 2.0 1 23 349 372 349 372 0.97

5 11 0.0021 0.16 12.6 1.6 1 23 715 738 715 738 0.96

6 11 0.00018 0.014 16.0 1.3 2 23 923 944 922 944 0.97

7 11 0.018 1.4 9.7 5.3 1 23 950 973 950 973 0.97

8 11 0.056 4.3 8.2 1.5 1 23 1003 1027 1003 1027 0.93

9 11 0.79 61 4.5 0.2 1 23 1048 1071 1048 1071 0.86

10 11 0.0013 0.1 13.3 0.2 2 23 1111 1132 1110 1132 0.96

11 11 0.02 1.5 9.6 5.3 1 23 1138 1160 1138 1160 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.12	9.1	7.1	0.4	1	23	86	109	86	109	0.95
2	11	0.016	1.2	9.9	0.1	1	23	290	312	290	312	0.97
3	11	0.00084	0.065	13.9	0.4	1	23	321	343	321	343	0.99
4	11	0.00052	0.04	14.5	2.0	1	23	349	372	349	372	0.97
5	11	0.0021	0.16	12.6	1.6	1	23	715	738	715	738	0.96
6	11	0.00018	0.014	16.0	1.3	2	23	923	944	922	944	0.97
7	11	0.018	1.4	9.7	5.3	1	23	950	973	950	973	0.97
8	11	0.056	4.3	8.2	1.5	1	23	1003	1027	1003	1027	0.93
9	11	0.79	61	4.5	0.2	1	23	1048	1071	1048	1071	0.86
10	11	0.0013	0.1	13.3	0.2	2	23	1111	1132	1110	1132	0.96
11	11	0.02	1.5	9.6	5.3	1	23	1138	1160	1138	1160	0.97

Sequence Information

Coding Sequence: ATGCAGGGGGCGGCGAACGCGCCTGCGCCCTCCGCGGCCGAGCCTCCAGCTTCGCAACAAATCAAAGCAGAAGTCATCAGTGAAGCAAAATTTGATGCTGACGAAATGAAGATCGAAACACGGGCCACCAGAACCATGAGTATTGATAGCGATAACCGCTCGGACAGGAGCGATGAAGAGGATTGCAGAAGAGCTCGCAAGAGAGCAGCTTCGTCTTCACCATCGCCCATGCCTCTAGATAAGAGGACAGCGCGTTTTGAATGCCCAAAATGCGTTCAACGCTTTGATTCTATGAACGCCTTTGACATCCACCGATTCACCGCTCATGGCGATGAAGCTAAGACAAACTATGATGAGTATGGCTTTGGTGATTTAGCAAATAAAAAGTTCTCCGATATTAATAGAAACATTGGTGAACGCCATCTGTATAGATGCGAATTTTGCTCTAGAGATTTCCCTTGTTTACAAGTTTTGGATATACACCGAAAGACGTGCTTGTCTACCCGAATCCCTAGTCCAGAGAGAGACCGTCGGGAGGACTTTTTTGCTAAGTTAGATCTAAGAAATAGATCTTTTGGTATTCCTGGAACCCTAACACCGCCTATGGAGAGATTTACTCCGAAATACGATGACGCACATTTAGGGAATGGCATTAGACATATTGATGCTGCAAGGGATTTGGCTGACATTCAATCCATATTAAATGTCACATCTGCAAGTAGTCTTTTAGAAAGATTAACAGGAACAAGAGTGGCATTAGAGAGCTCTGTACTCACTCCCCCGGATACCGCATCAAAAGAACGGGAACCAGAAGAAACTCAAGATAATTTTGCTGCTGAGTTCAGGCGTATGAAACTTCGAGGAGAATTTCCTTGTCGCTTATGTCCTGCTAAGTTTCCAAATCTTCGAGCTTTGAAGGGTCATAATAGAGTTCACTTAAGCGGAACTGGTCCTGGTCCATATCAGTGCAATATGTGCCCTCATGCGTCTCTCGATAAAGCAGCCTTAGTGCGCCATATGCGGACACATAACGGTGACAGACCATACGAATGTGCCGTCTGTAACTATGCCTTCACAACTAAAGCAAATTGTGAAAGACACCTGCGAAACCGCCATGCCAAGGTTACACGCGAAGACGTGAAGCGGTCTATCATTTACCACCCTTCAGAAGATCCAAATAATGACGAAGTAAATTCGAAGCTTGCACGGGAAGAAGTAAAAAGGTCTCTTGCATTCCACACACCTGATATTGAAAGGCGCACCGACTCCACAGGTCGTGATACTCCTTTAACTCATTACTCTCCAACATTTATCGCTGACAGGCACCCGGTCACTTCATTAGTTAAATCTTTACCTGAAACACCAACGCTAACACCTAGAGAATGTGACCAAACATTGCCGAGAATTAAAGTGAAAGGTATCGGTCAACTGACACAAATACCGGAATTCAGAACACCTGATGTTACATTTAAAGCAAACGAAATACATTCAGAAACTTACAACGAAGAAACTCCTGTTGACTTGAGTACAAGTGACAACAACAGTTGCGATGTCCTTGACCTAAGCAAGAAGAAACGAGATGCTGATGACGACGAACCTAAAGTTCAACCGCGACCTACGTTTGATTCCACAGCTGCGGCCACTGCTGCTGCCTTTGAGAAAACAAGGTTCCTTTTGGCTCAGCAAAGACTCTTTGAAACCGCTCTACCGAAGTTAGATCCAGCCTACTATGCCTCGCAGCTCTCTCAATTATACGCTGGTGCAGTACCCGGCTTGCCTGGACTGCCTTTGCCGCCATCATTTCCTTTAAACCCTTATTTTCTTCAATCTTCCATCTTTCCCAACCCGACTGATTCGCAAGAACTTGCCGAAATCAAACAGCGTATTCAAAAAGAGATAATTCGTGGCTTAAGCATGTCAGGCGGAAGACTCGTTTCGACAGAGCAAGAAATTCAGCCTAAACAAGAGCCAGAGGAAGAAGACCAGAAGCCTTTGCAAGTGTCCACAACGCCTACACCCCCGCCCCACCCTGAATCTCCGCAACATAATAGTGTGCCACAAAATGATCCAATTAAAATGGTTATAAAGAATGGTATTCTAATGCCTAAGCAAAAACAACGTAGATACCGCACTGAACGCCCATTCTCATGCTCACAGTGCTCCGCTCGTTTCACATTGCGCTCAAACATGGAACGTCACGTCAAACAACAACATCCGCAACATTGGAGTATAAGACGGCCAACGCCGAGAGCGCCACCACCGTATCCTGGTTCTGAAAACCTAGCTGATCGTGTGAAGTACGCCCTTTTGGCTAGACACCTTGAAAGACCAACACAACTAGACCGATCACCCATAAGAAGAGACTCCGACGAAGTTGCTGATAACGAAGAAGACGAGGAGGACGCTTTAGTTATTGATGAGGAACCGGATGAAAAGATAGATGAACATTCCGCTGCACATCGAGCTGCAGCTGAAATATTAATGGCGACGCGGCAACAGGAAATTAACAAAGACTTTGATCTAAAAATAGCTGGAAGCCTCATTAACAAGCCGTTACCTATACCTTCGGAGAAAACAGAAAGTATTCCATCAAGTCAAGATGTGGCAGTAGTGCCAACGCGGTCTGATGAAGAAGAGGATGAAGAAGGTCTGGTTGCTTCTACCAGTGAAGGCAATAACTCTGGCAGCGATGAAAACAAATCGGAGTCCGACACAAACCTGCCACCAAAGAAAAAATCAGCCTACAGTCTCGCGCCAAATAGAGTCTCTTGTCCGTACTGCCATCGCAAATTCCCTTGGTCCTCTTCCCTCCGGCGACACGTCCTCACCCATACGGGCCAAAAGCCTTTCAAATGTCCCCACTGTCCTCTCCTCTTCACAACTAAATCCAACTGCGATCGGCACCTATTGCGAAAACACGGAGGCTCGGCTAAGGCTATTTTGGCAGAACCAATTCCTGTCACACTCCCAACGCCGAATGACACCAGAGCAGTACCCGAAAGACCATTCAAATGTGCCACCTGTCCTACCAGCACATTTTCCTCAATGGAGACGTTGAAGAAGCATATGTCTTCGCGTCATGGCAGCGGAGAATCGCCTCCATCGCCATTGCCAGAGGAAGAATCTGATGTTGGGCTCGTTTTCAAATGCCACCTGTGTGAAGCGGCTTTTGGTGACAGGAATGGGGCTTTGGGGCATCTGTCATCCAATCACACGGTGGAGTACGAGCAGTTGGTGTCAAAGGGTGCCTTGGATGCGGCCAGCGATAGAAGCGAAAGCGCTGACGATGATGATAGGGGAAAGTTTCCAGATCATGCCAACAGAAAGGTGGTATGCGCATTCTGCGTGCGTCGTTTCTGGTCAGCAGAGGATTTGCGCAGACATATGCGCACACACTCCGGTGAACGACCTTTCGCCTGCGACCTCTGCAGGCGCCGGTTCACCCTCAAGCACAGCATGCTGCGTCACCGCAAGAAGCATCGCGAAGAGGCGACTGACGACGAAGAGACCACTCCACCTGATACGCCCATCGATGCCTCTAATGGTTACCGTTACCAAGACGACGAAGGCTCCGGAAACGAGATCCCAAACAACGTGAACAACAACAACTCACCTCCTTCGCTGCCCTACGATAAGAAAATCAAGCTGGACATGTCCCGGAAGTACTCCTCCGAGGAAAACGAAGGCGAAAACGGAAGCGACCTCATCGGTAAGCTTCTAGGAATTCCGGACAAGACCATCATCAATAAACTTCTCTCATCCGCCGACGAAGCTGCTAAATTCCTGGGAGTCAACAAATGA
Protein Sequence: MQGAANAPAPSAAEPPASQQIKAEVISEAKFDADEMKIETRATRTMSIDSDNRSDRSDEEDCRRARKRAASSSPSPMPLDKRTARFECPKCVQRFDSMNAFDIHRFTAHGDEAKTNYDEYGFGDLANKKFSDINRNIGERHLYRCEFCSRDFPCLQVLDIHRKTCLSTRIPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKYDDAHLGNGIRHIDAARDLADIQSILNVTSASSLLERLTGTRVALESSVLTPPDTASKEREPEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPDIERRTDSTGRDTPLTHYSPTFIADRHPVTSLVKSLPETPTLTPRECDQTLPRIKVKGIGQLTQIPEFRTPDVTFKANEIHSETYNEETPVDLSTSDNNSCDVLDLSKKKRDADDDEPKVQPRPTFDSTAAATAAAFEKTRFLLAQQRLFETALPKLDPAYYASQLSQLYAGAVPGLPGLPLPPSFPLNPYFLQSSIFPNPTDSQELAEIKQRIQKEIIRGLSMSGGRLVSTEQEIQPKQEPEEEDQKPLQVSTTPTPPPHPESPQHNSVPQNDPIKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSIRRPTPRAPPPYPGSENLADRVKYALLARHLERPTQLDRSPIRRDSDEVADNEEDEEDALVIDEEPDEKIDEHSAAHRAAAEILMATRQQEINKDFDLKIAGSLINKPLPIPSEKTESIPSSQDVAVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTNLPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIPVTLPTPNDTRAVPERPFKCATCPTSTFSSMETLKKHMSSRHGSGESPPSPLPEEESDVGLVFKCHLCEAAFGDRNGALGHLSSNHTVEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEATDDEETTPPDTPIDASNGYRYQDDEGSGNEIPNNVNNNNSPPSLPYDKKIKLDMSRKYSSEENEGENGSDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202808;
90% Identity: iTF_01204411; iTF_01206059; iTF_01203587; iTF_01205241; iTF_00879168; iTF_00771376; iTF_01202808; iTF_00115259;
80% Identity: -