Basic Information

Insect: Anthocharis cardamines
Gene Symbol: RREB1
Assembly: GCA_905404175.1
Location: FR989973.1:2664876-2670788[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.63 61 4.7 1.0 1 23 51 74 51 74 0.93

2 12 8.5 8.3e+02 1.2 0.9 1 10 115 124 115 135 0.91

3 12 0.014 1.4 9.9 0.1 1 23 262 284 262 284 0.97

4 12 0.00075 0.073 13.9 0.4 1 23 293 315 293 315 0.99

5 12 0.00046 0.045 14.6 2.0 1 23 321 344 321 344 0.97

6 12 0.0019 0.18 12.7 1.6 1 23 691 714 691 714 0.96

7 12 0.00016 0.015 16.1 1.3 2 23 902 923 901 923 0.97

8 12 0.016 1.6 9.7 5.3 1 23 929 952 929 952 0.97

9 12 0.03 2.9 8.9 0.7 1 23 982 1006 982 1006 0.94

10 12 0.14 14 6.8 0.1 1 23 1027 1050 1027 1050 0.85

11 12 0.0012 0.11 13.3 0.2 2 23 1090 1111 1089 1111 0.96

12 12 0.018 1.7 9.6 5.3 1 23 1117 1139 1117 1139 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.63	61	4.7	1.0	1	23	51	74	51	74	0.93
2	12	8.5	8.3e+02	1.2	0.9	1	10	115	124	115	135	0.91
3	12	0.014	1.4	9.9	0.1	1	23	262	284	262	284	0.97
4	12	0.00075	0.073	13.9	0.4	1	23	293	315	293	315	0.99
5	12	0.00046	0.045	14.6	2.0	1	23	321	344	321	344	0.97
6	12	0.0019	0.18	12.7	1.6	1	23	691	714	691	714	0.96
7	12	0.00016	0.015	16.1	1.3	2	23	902	923	901	923	0.97
8	12	0.016	1.6	9.7	5.3	1	23	929	952	929	952	0.97
9	12	0.03	2.9	8.9	0.7	1	23	982	1006	982	1006	0.94
10	12	0.14	14	6.8	0.1	1	23	1027	1050	1027	1050	0.85
11	12	0.0012	0.11	13.3	0.2	2	23	1090	1111	1089	1111	0.96
12	12	0.018	1.7	9.6	5.3	1	23	1117	1139	1117	1139	0.97

Sequence Information

Coding Sequence: ATGAAGATCGAAATGAGAGCGAAAAGAACAACAAGTATAGACAGCGATAATCGTTCAGATAGAAGTGATGAGGAAGACTGTCGAAGAGCACGCAAGAGAGCAGCTTCCACGTCACCATCGCCTATACCTTTGGATAAAAGAACAGCTCGGTTCGAGTGCCCAAAATGCCTCCACCGTTTCGATTCCATTAACGCCTATGATATCCATCGATTTACTGCACACGGTGACGAAAACAAAACAAACTATGAAGACTACACCTTTTCTGATTTTGCTAATAAAAAATTCTCCGATATTACCCGAAATATTGGCGATCGCAACCAAATGGCAATAAATGACCAACTGTATAGATGTGAGTTTTGCTCAAGGGAGTTTCCTTGTTTGCAAGTTTTAGATATTCATAGAAAGTCTTGTTTGGCAACAAGAATACCAAGCCCGGAAAGGGATCGCAGAGAGGACTTTTTTGCCAAATTGGATCTAAGAAATAGATCCTTTGGTATCCCAGGTACCTTAACTCCGCCTATGGAGAGATTTCCGCCAAAATTTGATGACGCACATTTAGGTAATGGCATAAGACACATTGATGCTGCAAGAGATTTGGCAGACATCCAATCCATATTAAACGTCACATCCGCGGGTAGTCTTTTAGAACGATTAACGGGGACAAGGGTAGCGTTAGAGAGCACTGTACTTACTCCACCTGATACGATATCCAAAGATCGTGAACCGGAAGAAACTCAGGATAATTTCGCTGCTGAATTCAGGCGCATGAAACTTCGCGGAGAATTCCCGTGTCGTTTATGTCCAGCTAAGTTTCCGAACCTAAGAGCTTTGAAGGGTCACAATAGAGTCCATCTGAGCGGAACTGGTCCTGGCCCTTACCAGTGCAATATGTGCCCTCATGCCTCTCTAGATAAAGCGGCATTAGTCCGCCACATGCGTACGCATAACGGTGATAGACCATACGAATGTGCCGTATGTAATTATGCTTTTACTACCAAAGCTAACTGTGAAAGACACTTAAGAAATCGCCACGCTAAAGTCACCCGAGAAGACGTCAAGCGGTCCATTATATATCACCCTTCAGAAGATCCGAACAATGACGAAGTTAATTCCAAGCTTGCAAGAGAAGAAGTAAAAAGGTCGCTTGCATTCCATACGCCTGATCTAGAAAGACGCGCCGATTCAACCGGTCGTGATACACCATTAACCCATTACTCGCCAACATTTATCGCTGACAGGCACCCGGTTACTTCGTTAGTCAAATCTCTACCTGAAACACCAACTTTAACTCCAAGGGAATGTGAACAAACAATGCCAAGAATTAAAGTTAAAGGTATCGGGCAACTAACACAGATACCTGAATTCAGAACACCCGATATTACATTTAAGACAAACGATGTTAAATCTGAATGTTACAATGAAGAAGCTCCAGTAGACCTCAGTACGAGTGATAACAACAGTTGTGATGTTCTTGATCTGAGCAAAAAGAAACGAGATGTAGAAGACGAAGAGCCGAAAGTCCAGCCTCGTCCAGCCTTCGATACTACAGCAACAGCAGCGGCCACAGCTGCAGCGTTTGAGAAGACCAGATTCCTTCTTGCCCAGCAAAGACTCTTCGAAACCTCTCTACCTAAAATAGACCCAGCTTATTACGCTACACAGCTATCACAGTTATATGCTGGATCTGTACCTGCCTTACCCGGTTTGCCTCTGCCACCGTCTTTCCCTATCAACCCTTACTTTCTCCAATCTTCTTTTTTTCCGCACCCAACTGATTCACAAGAACTTGCCGAAATAAAACAGCGAATACACAAGGAAATCATTCGCGGTTTAAGCATGTCAGGCGGGAGACTAGTTTCAACTGAGCAAGAGGTTCAGCCTAAGCAAGAGCCAGAAGAAGAAGAACAGAAGCCTTTGCAAGTACCGACAACACCTACACCTCCGCCGCACTGTGAATCTCCGCATCATACCAACAACATCGTACCAACAAACGATCCCGTGAAAATGGTTATTAAGAATGGTATTCTAATGCCAAAGCAAAAACAGAGAAGATATCGCACTGAACGACCATTTTCTTGCTCACAGTGTTCCGCTCGTTTCACATTGCGGTCAAATATGGAACGACACGTTAAACAGCAACATCCTCAACACTGGAGTGTAAGAAGACCGACACCTAGAGCGCCGCCACCGTATCCTGGTTCAGAAAACCTTGCTGATCGTGTTAAATACGCTCTTTTAGCCAGACATCTTGAAAGACCCACGCAACTAGATCGCTCTCCCATTCGTAGAGATTCTGATGAAGTTGCCGATAATGAAGAAGATGAAGATGACGCGTTAGTTATCGATGAAGAAACAGATGAAAAATCAGATGAACATTCTGCTGCGCATCGCGCCGCAGCGGAAATACTAATGGCGACACGTCAACAAGAAATTAATAAGGACTTTGATCTTAAAATAGCAGGAAATCTCATTAACAAGCCAACACCTATTGTTTCGGATAAAATGGAAACTAGTGAAGCTGTTCCGCTAACCCAAGACCTACCAGTGGTTCCAACTCGCAGTGATGAAGAGGAGGATGAAGAAGGACTTGTTGCCTCTACGAGTGAAGGAAATAATTCCGGAAGTGACGAAAACAAGTCGGAATCAGATACTAACCAACCACCTAAGAAGAAATCTGCATACAGTCTCGCCCCGAACCGAGTATCTTGTCCATACTGCCACCGAAAATTCCCCTGGTCGTCTTCCTTACGCCGCCACGTCCTAACCCACACCGGCCAGAAACCCTTCAAATGCCCACATTGCCCTCTACTCTTCACGACAAAATCCAACTGCGATCGTCACTTGTTGAGAAAGCATGGAGGTTCTGCGAAGGCGATTTTAGCTGAACCAATCCCTGACACAATACCAACTCCTACAGATGCCAGATCAGTACCAGAAAGGCCTTTTAAATGTGCGACATGTCCCGCTAGCACATTCTCTTCAATAGACACTTTGAAGAAGCATATGTCGTCACGTCACGGTAGTGGGGAATCCCCGCCATCACCAGTACCGGATGAGGAAATCGAGAGTGGCTTGGTCTTCAAATGCCATCTGTGTGAAGCATCTTTTGGGGATCGGAGCGGTGCATTGGGCCATCTCTCGGCGGGGCATTCAACAGAGTATGAACAGTTGGTTTCTAAGGGGGCTCTGGATGCGGCAAGTGATAGGAGTGAAAGTGCGGATGATGATGATAGGGGGAAGTTCCCGGATCACGCTAACAGAAAGGTGGTATGCGCATTCTGCGTCCGTCGTTTCTGGTCAGCTGAGGACCTGCGCAGGCACATGCGCACTCACTCCGGCGAGCGGCCATTCGCCTGCGACCTGTGCAGGCGCCGATTCACGCTCAAACACAGCATGCTACGACACCGTAAGAAGCATCGCGAAGAGGCCACAGACGATGAAGAAGTAACTCCACCGAATACACCACTCGATGTGGTCAACGGTTACCGTTACCAAGACGACGAGGGCTCTGGCAACGAGATCCCCAACAACATAAACAACAACAATTCTCCCCCCTCCCTCCCCTACGAGAAGAAATTACAGCTAGACATGACGTCACGCAAATACTCCTCCGAGGAAAACGAGGGAGAGAACGGAAGTGACCTTATCGGGAAACTCTTGGGGATCCCGGACAAAACAATCATTAACAAATTGTTGTCTTCAGCTGACGAGGCCGCGAAGTTCTTGGGTGTGAATAAATGA
Protein Sequence: MKIEMRAKRTTSIDSDNRSDRSDEEDCRRARKRAASTSPSPIPLDKRTARFECPKCLHRFDSINAYDIHRFTAHGDENKTNYEDYTFSDFANKKFSDITRNIGDRNQMAINDQLYRCEFCSREFPCLQVLDIHRKSCLATRIPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFPPKFDDAHLGNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESTVLTPPDTISKDREPEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPDLERRADSTGRDTPLTHYSPTFIADRHPVTSLVKSLPETPTLTPRECEQTMPRIKVKGIGQLTQIPEFRTPDITFKTNDVKSECYNEEAPVDLSTSDNNSCDVLDLSKKKRDVEDEEPKVQPRPAFDTTATAAATAAAFEKTRFLLAQQRLFETSLPKIDPAYYATQLSQLYAGSVPALPGLPLPPSFPINPYFLQSSFFPHPTDSQELAEIKQRIHKEIIRGLSMSGGRLVSTEQEVQPKQEPEEEEQKPLQVPTTPTPPPHCESPHHTNNIVPTNDPVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPGSENLADRVKYALLARHLERPTQLDRSPIRRDSDEVADNEEDEDDALVIDEETDEKSDEHSAAHRAAAEILMATRQQEINKDFDLKIAGNLINKPTPIVSDKMETSEAVPLTQDLPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIPDTIPTPTDARSVPERPFKCATCPASTFSSIDTLKKHMSSRHGSGESPPSPVPDEEIESGLVFKCHLCEASFGDRSGALGHLSAGHSTEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEATDDEEVTPPNTPLDVVNGYRYQDDEGSGNEIPNNINNNNSPPSLPYEKKLQLDMTSRKYSSEENEGENGSDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202808;
90% Identity: iTF_01206910;
80% Identity: -