Prap000119.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- zfy1
- Assembly
- GCA_905147795.1
- Location
- LR990590.1:10749757-10755827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2 1.7e+02 3.1 0.3 2 23 11 32 10 32 0.95 2 13 0.047 3.6 8.4 2.1 1 19 1024 1042 1024 1044 0.97 3 13 4e-05 0.0031 18.1 1.1 2 23 1134 1155 1133 1155 0.97 4 13 1.3e-05 0.001 19.6 1.1 1 23 1161 1183 1161 1183 0.99 5 13 0.00047 0.036 14.7 3.3 2 23 1190 1211 1189 1212 0.95 6 13 0.18 14 6.5 1.0 6 23 1226 1243 1224 1243 0.97 7 13 0.00015 0.011 16.3 0.5 3 23 1250 1271 1249 1271 0.97 8 13 0.0044 0.34 11.6 0.5 2 23 1287 1307 1286 1307 0.96 9 13 5.4e-05 0.0041 17.7 0.5 1 20 1313 1332 1313 1335 0.92 10 13 0.0027 0.21 12.3 0.3 1 23 1343 1365 1343 1365 0.97 11 13 0.00082 0.063 13.9 7.3 1 23 1371 1393 1371 1393 0.98 12 13 1.3e-06 0.0001 22.7 0.8 1 23 1399 1423 1399 1423 0.95 13 13 0.0017 0.13 13.0 4.4 1 23 1429 1451 1429 1452 0.95
Sequence Information
- Coding Sequence
- ATGTTAGAGGACAAGATGGATGAGAAAGTTCAGTGTCCAGTTTGTACTCTTTATCTTCACAATGGGATGTCGTTAGAGACTCATTTGGATACGCATCCTAAAGATCAAGTTATTAAAGCTTTATGTTGTTTATCTTCCAAAGGCAATGCAAGTGGCAGTAGAACTCCCACACCATCAATTTCCGAACGTTCTTATAGAAGTAGGACCCCGGTGACAGATGATAGTGTTAGATGGTCTTCATCACGCCGCAGTGCTGAAAGCACTTATTGGAGAAGGACACCTAGCAGAAATAAATCATTGTCATCATGTAACTCTAGAAATGCCACTCCAGAAGCCAGACTGAATGTTACCAACTTTGACAGCAATGCTGTCAACAATTGTTCTGAATTTTCAAATTGTTCAGTGAAGTCTTCTAAAACATCCCAGTCATATCTGCCGAGTGTGCCAACAATACAATCAAACTATAGTCAGCAATATCCATTCTACAGTGAGCCTACAGAAGACCCGGAAATAAAGTATTCTCGCAGCTCTGATTACAATGTGGCTGAAAATACAAATCAGCTGTTTGTTTATAATGTTCCAGTACTAACATCAAATGTAAAAGTTTCAACTTCTCCTACATTACCAACACCTTCAACATCTAAAAAACAGAGTAATTATGTAAAAATTCTTCCAAAACAAAACATGGTTTTAAAAAATGCTGCTAGGTTAGGATACATTGCTCCAGGGCTCAAGCCATATCCTGTTATGATGTCCACATCTCCAACTTATATGCAAAAAAATGTTCAAACTAATATGATGGTTGCGGGAAGTGTACCTGTGTCTGGAATAATTGATACTAAAACAGCTGTGGCTCCATTAGCAAGTCAGTTCACTCAACTTAATTCAGGCAACTTAACAACTGGGACAACTGTGGTAACTCAAAATTCACAAATTATTTATCGGGAGATGGTGCATAGTATAGATGGAAAACCTTATATTTCAAATATACCACATGTTCTTAATACACATGAAAATATGGGGCAGAGTGGCTCATTGTATCAAAATCTTATGGTGGTTGACCCATTCGGTAACACTTCATGTATGTATAGTTCGCCTCAATCTATTTTACCCAAGACTTGTAACTCTCCAATATTCAGCAATAATTTATCACATATACCAACATCAATTGACAAGTCAATACCAAATATTGTAAATGATGTTAGTAAAACATTGATAATGGAGGTTAGCCCAATTCAGCATCAAATGTCATCTAAAACTGAGGTGATGGCGATGCAACAAGTGGAGGAGACCATGGGTGGTAACTGTGCTCAAGGACAGACAGAAAGTGATACTGTACATAGATCATTAGAACTAGAGTCTGAGTCTAAAAGTTCAACATCTGTTTCCACAAAGGGACTAAAAATTCTGAGCAATATTAAAGTGGAAGTTCCTGTACAGCACAGCAAGAACATGATTAATACTATTATGGACCTTACCGGTCCAGGAGACTCTGGGTACATTCAATGTCCTCAATCACCTGAGAATATTCTACCAGATTTAAAGGAGAAACCTCAGAGTAGATCAGATATTGACAATCACTGTCACCCATCTAATGAGAGTAATGAAAAATATACACCTCATAACTTTTCAGTTATAAAAAATGTTGGCAATCCACAGTCCTGTAAGGATTTTCCTAAGTTAAATAGTGCACAGGAGGACAATGAATCATGCGATAGCAATCCAGTTCCTGACCTTATATGCAACGAAAAGCCTTCAATATCACCCTGCAGTGACTTATCAGAAAACTCCATGGACCAGTGTTCACCACTCTCAAAGCATGACCATGCTCCAGAAACCAAAAAAGAAATAATTTCTGGCAATGATCAGAAATTAAAAACTGAGATGGTAACAATTAAGGCACATGTGGAAAGAGATGATTCAAATACTTCTAAATCTACAGCAACATTTCCAGTTGTCCAAGCCTTGACAAACATTGTTGTTGAAAATGATGATTTTCATTCTAAACAAAAGAGCCATCCCCTTAGACTAAACAATATATTTGTCAAAAAACATAAAAAGCTAACTATAAAAAATTTTAAGCCATCAAAATTTGATTCAGACCCACGACCTTCGTCATCCACAAGTAAATCTGAACAATACTTCAATCTGAATATTGAGAAGGTAGAAAATCACGAGGATGGAATTCAGCCTGAAACTTCTGTTCAAAAAATTGAAGTCTTAGAAAATGAGAAAGAATTCGATGCCGACACAGAAGAGCAATCAATGGATATTGAGCCGACTGCGCCTTCAATGATAAGTCACTCCAATGGCTATTCAACCTCCATTGACTTGGTAATCAAGGAGGAAGTGAATTCCAACAATGAGTTCAGCAACGAAGCCGATAAGTCCGGACGTGACGTGGCCAACCTCGAGTCTTTGCGTCCGATCAATGTGATCACTTATGGCAATATGGGTGCCGCAGATTTTGACGACGATTCCAACCATAGAGAGCTGCTGGACTTAGAGACGGCTTCTAAAAACAAGCAATTTGTCAACATGATGAACGATAACTATTTCGGTGATAATATTTACGCTGATTATTTCACACCTGATCGCGTCGAGAGTTTCGATTCAGAGAAAGGATCGAATGTGGGTAAGGATAGGGAAGTGTATAATATTTGGGGAGAACCATCGCAAAAGGAGAACGAGTTTGTCTTACCAAATTTTATTCACGAAAGCTACAAAATTGCCGAGAGCAATATGGATTATGATATTGGAGAAAATCAAAATATAAATCACATGGGACACGGAGAACGGGATAGTAAGGCTGATGTTTTACAAGAGACTAGGGAAGAGGACCCGCCGCTGAATATTTGTGCAGACGAGCGGATGCCCCCCCGAGGGGAACTCAGCGGACAAGAGAGTAATGGCGATATGGAGTCATCATGGAGCGGGATGTACCCGGAGGTGACGGCCGCGGAGCCTTACGACCTGATGGCTCGCGAGAGTTGGGTCTCCGACGGTTCGGACGTCGACGACAACCACAAGACGGAAAATTTAGAGGAACCGTTGACGAAAGGGCGCCTCCACACGTGCGCCCAGTGCGGCCTCAAGTTCCCGACGCTGAAGGAATTGCGATCCCATTGCAACGCCTCCTACTCCCACAGCCGCATCGCCCGCTGCATCAAGAGAGAGGAAAAACCGGACGTGCCTTCGTTAGCTGAAACCCTCATATTCGAAACCAAAGACGCGGTGGCAACCTCCATCCTGCCCGAATTCGATCCGCTGGCCGAGACCAAGCCGGAGCTGATCCTGATAAAGCAGAAGAAGAAGCGGAACAACTTCGTGTGCTTCACGTGCAACGTGGACCAGGGCGGCCCCGAGGCCTTCAACGAGCACCTCAAGGTTCACCCGCTGGAGTGCTACACGTGCGGCAAGTTCTTCTACCGGCGAGCCAACCTGGTGCTGCACACGAAGACGCACCTCGGCATCAAAAATTACAAGTGCGAGGTGTGCGGCAAGCGCTTCGTGACGCGGCAGAAGCTGGGCGAGCACCGCAACACGCACACCGGGCAGGCGCCCGTCAAGTGCACGCTGTGCGACCAGACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGGGACCGACACCACCTGAAGAAGAAGGCCAAGGTGCGCGACTTCGTGTGCCGCTGCGGCGCCGTGTTCCACTCGCGGGCCAAGCTGCTGTGGCATCAGGAGACGCACGAGGAGCGGCCCAAGGCCTGCCCGTACTGCGGAGACAAGTTCGTGCACGCGGCGTCGCTCACGCGCCACGTGCGGCGCTCGCACAACCACCTGTACGTGGCGAGGCGCTCGGGCCGCGACGAGAACGTGCCGTGCCCCGTGTGCAAGCAGGTCTACCTGCGCTCCAACCTGCGCGCCCACCTGCACACGCACAGCGGCAAGCGGCCCTTCGTGTGCGTCATGTGCGACAAGGCCTTCACCACCAAGTGGAACCTGAAGCTCCACCGCTGGACGCACGCCAGCCGCTCGGCCAAGCCCTACAAGTGCACCCTGTGCAAGGGCGCCTTCTTCCGCCAGAGCGAGTACGCGGCGCACGTGAACGCGCATCGCTCGGTGCGGCCGTACACGTGCAAGCACTGCGGCCGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGACGGCCAAGCGCTACGCCTGCGAGGTGCCCGACTGCGGCAAGACCTTCCACCGCAGCTACTACCTCACGGAGCACATGCGCGTGCACAGCGGCGCCCGCCCCTTCGCCTGCAACGTCTGCGGCAAGACCTCCACCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGAGAGCCCATCGCCACCGAGGCCTAG
- Protein Sequence
- MLEDKMDEKVQCPVCTLYLHNGMSLETHLDTHPKDQVIKALCCLSSKGNASGSRTPTPSISERSYRSRTPVTDDSVRWSSSRRSAESTYWRRTPSRNKSLSSCNSRNATPEARLNVTNFDSNAVNNCSEFSNCSVKSSKTSQSYLPSVPTIQSNYSQQYPFYSEPTEDPEIKYSRSSDYNVAENTNQLFVYNVPVLTSNVKVSTSPTLPTPSTSKKQSNYVKILPKQNMVLKNAARLGYIAPGLKPYPVMMSTSPTYMQKNVQTNMMVAGSVPVSGIIDTKTAVAPLASQFTQLNSGNLTTGTTVVTQNSQIIYREMVHSIDGKPYISNIPHVLNTHENMGQSGSLYQNLMVVDPFGNTSCMYSSPQSILPKTCNSPIFSNNLSHIPTSIDKSIPNIVNDVSKTLIMEVSPIQHQMSSKTEVMAMQQVEETMGGNCAQGQTESDTVHRSLELESESKSSTSVSTKGLKILSNIKVEVPVQHSKNMINTIMDLTGPGDSGYIQCPQSPENILPDLKEKPQSRSDIDNHCHPSNESNEKYTPHNFSVIKNVGNPQSCKDFPKLNSAQEDNESCDSNPVPDLICNEKPSISPCSDLSENSMDQCSPLSKHDHAPETKKEIISGNDQKLKTEMVTIKAHVERDDSNTSKSTATFPVVQALTNIVVENDDFHSKQKSHPLRLNNIFVKKHKKLTIKNFKPSKFDSDPRPSSSTSKSEQYFNLNIEKVENHEDGIQPETSVQKIEVLENEKEFDADTEEQSMDIEPTAPSMISHSNGYSTSIDLVIKEEVNSNNEFSNEADKSGRDVANLESLRPINVITYGNMGAADFDDDSNHRELLDLETASKNKQFVNMMNDNYFGDNIYADYFTPDRVESFDSEKGSNVGKDREVYNIWGEPSQKENEFVLPNFIHESYKIAESNMDYDIGENQNINHMGHGERDSKADVLQETREEDPPLNICADERMPPRGELSGQESNGDMESSWSGMYPEVTAAEPYDLMARESWVSDGSDVDDNHKTENLEEPLTKGRLHTCAQCGLKFPTLKELRSHCNASYSHSRIARCIKREEKPDVPSLAETLIFETKDAVATSILPEFDPLAETKPELILIKQKKKRNNFVCFTCNVDQGGPEAFNEHLKVHPLECYTCGKFFYRRANLVLHTKTHLGIKNYKCEVCGKRFVTRQKLGEHRNTHTGQAPVKCTLCDQTFRRYSNMVQHRDRHHLKKKAKVRDFVCRCGAVFHSRAKLLWHQETHEERPKACPYCGDKFVHAASLTRHVRRSHNHLYVARRSGRDENVPCPVCKQVYLRSNLRAHLHTHSGKRPFVCVMCDKAFTTKWNLKLHRWTHASRSAKPYKCTLCKGAFFRQSEYAAHVNAHRSVRPYTCKHCGRQFIRKYNCQRHVREHETAKRYACEVPDCGKTFHRSYYLTEHMRVHSGARPFACNVCGKTSTNKSNHNKHVKIHHAREPIATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204282;
- 90% Identity
- iTF_01205140;
- 80% Identity
- -