Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990606.1:1301225-1306636[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.044 3.4 8.5 0.8 2 23 117 138 116 138 0.96

2 30 0.017 1.3 9.8 0.1 1 23 142 164 142 164 0.95

3 30 0.066 5.1 7.9 0.3 1 15 169 183 169 192 0.77

4 30 0.0036 0.28 11.9 1.1 1 23 198 221 198 221 0.95

5 30 4.3e-05 0.0033 17.9 1.3 1 23 228 251 228 251 0.97

6 30 3.7e-06 0.00028 21.3 3.5 1 23 258 280 258 280 0.98

7 30 0.011 0.89 10.3 0.3 1 23 349 372 349 372 0.96

8 30 0.15 11 6.8 0.1 2 23 399 421 398 421 0.89

9 30 0.14 11 6.9 5.8 1 23 443 465 443 465 0.98

10 30 0.00013 0.01 16.4 0.6 1 23 469 491 469 491 0.97

11 30 0.065 5 8.0 0.2 1 22 525 546 525 548 0.87

12 30 0.0022 0.17 12.6 3.9 1 23 555 578 555 578 0.98

13 30 0.058 4.5 8.1 0.3 1 23 640 662 640 662 0.92

14 30 0.09 7 7.5 0.0 2 23 686 708 685 708 0.94

15 30 0.015 1.1 10.0 3.2 2 23 731 752 730 752 0.96

16 30 0.0028 0.22 12.2 3.3 3 23 758 778 757 778 0.97

17 30 0.00047 0.036 14.7 1.5 2 23 784 806 783 806 0.91

18 30 5.1e-05 0.0039 17.7 1.8 1 23 812 835 812 835 0.97

19 30 0.0016 0.13 13.0 0.8 1 23 841 864 841 864 0.96

20 30 0.0002 0.015 15.9 0.3 1 23 870 892 870 892 0.95

21 30 8.5e-06 0.00066 20.2 1.2 1 23 898 920 898 920 0.99

22 30 0.0074 0.57 10.9 0.1 2 23 1025 1046 1024 1046 0.96

23 30 0.04 3.1 8.6 4.8 1 23 1068 1090 1068 1090 0.97

24 30 0.0035 0.27 12.0 0.4 1 23 1094 1116 1094 1116 0.98

25 30 0.1 8 7.3 0.1 1 23 1121 1144 1121 1144 0.95

26 30 4.2e-05 0.0033 18.0 1.5 1 23 1150 1173 1150 1173 0.98

27 30 0.008 0.62 10.8 0.9 1 23 1180 1203 1180 1203 0.97

28 30 0.0033 0.26 12.0 1.9 1 23 1209 1231 1209 1231 0.94

29 30 1.2e-06 9.4e-05 22.8 1.0 1 23 1237 1259 1237 1259 0.99

30 30 1.4e-06 0.0001 22.7 2.6 1 23 1265 1287 1265 1288 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.044	3.4	8.5	0.8	2	23	117	138	116	138	0.96
2	30	0.017	1.3	9.8	0.1	1	23	142	164	142	164	0.95
3	30	0.066	5.1	7.9	0.3	1	15	169	183	169	192	0.77
4	30	0.0036	0.28	11.9	1.1	1	23	198	221	198	221	0.95
5	30	4.3e-05	0.0033	17.9	1.3	1	23	228	251	228	251	0.97
6	30	3.7e-06	0.00028	21.3	3.5	1	23	258	280	258	280	0.98
7	30	0.011	0.89	10.3	0.3	1	23	349	372	349	372	0.96
8	30	0.15	11	6.8	0.1	2	23	399	421	398	421	0.89
9	30	0.14	11	6.9	5.8	1	23	443	465	443	465	0.98
10	30	0.00013	0.01	16.4	0.6	1	23	469	491	469	491	0.97
11	30	0.065	5	8.0	0.2	1	22	525	546	525	548	0.87
12	30	0.0022	0.17	12.6	3.9	1	23	555	578	555	578	0.98
13	30	0.058	4.5	8.1	0.3	1	23	640	662	640	662	0.92
14	30	0.09	7	7.5	0.0	2	23	686	708	685	708	0.94
15	30	0.015	1.1	10.0	3.2	2	23	731	752	730	752	0.96
16	30	0.0028	0.22	12.2	3.3	3	23	758	778	757	778	0.97
17	30	0.00047	0.036	14.7	1.5	2	23	784	806	783	806	0.91
18	30	5.1e-05	0.0039	17.7	1.8	1	23	812	835	812	835	0.97
19	30	0.0016	0.13	13.0	0.8	1	23	841	864	841	864	0.96
20	30	0.0002	0.015	15.9	0.3	1	23	870	892	870	892	0.95
21	30	8.5e-06	0.00066	20.2	1.2	1	23	898	920	898	920	0.99
22	30	0.0074	0.57	10.9	0.1	2	23	1025	1046	1024	1046	0.96
23	30	0.04	3.1	8.6	4.8	1	23	1068	1090	1068	1090	0.97
24	30	0.0035	0.27	12.0	0.4	1	23	1094	1116	1094	1116	0.98
25	30	0.1	8	7.3	0.1	1	23	1121	1144	1121	1144	0.95
26	30	4.2e-05	0.0033	18.0	1.5	1	23	1150	1173	1150	1173	0.98
27	30	0.008	0.62	10.8	0.9	1	23	1180	1203	1180	1203	0.97
28	30	0.0033	0.26	12.0	1.9	1	23	1209	1231	1209	1231	0.94
29	30	1.2e-06	9.4e-05	22.8	1.0	1	23	1237	1259	1237	1259	0.99
30	30	1.4e-06	0.0001	22.7	2.6	1	23	1265	1287	1265	1288	0.96

Sequence Information

Coding Sequence: ATGAAAAAGAACGCAACGACTATATTAGAATGTTGGGGAATCATACCTTTTAGGTGGAAGAAAAATCATTTTAAATGTGCGTTCTGCGAGAATATATTCACATGTTGCATTGAGTTACGGGAGCATGTTAAAATATGTTCGACGCATCACAGTGTGAAAGATATATACAGCAAGTTCAAAGAAATGTCCCTGATTAATGTGGACGTCACCAATGCAGTGTGTCGGCTATGTGCATGCCCCTTTTACAGCGTTCCACAAATGAGACAGCATGTCATTGAACATGGCCTGGATTTCGATAGCTCTCACCCGGATGGCGTCCTACCTTTCGGTCTGGATAACAATCTATGGTCCTGCCTGATATGCCGAGTGAAATTCAACAATTTCCTCAAATTGTATGAACATATGAATACGCATTATCAGCATTATATATGTGCAACCTGCGGTAAAGGATATATGACTGCACCGAGGTTGAGAAAGCATTCAGAAGTCCATTTAAAGGGTTCGTTCCCATGTGAGAAATGTGGGCGCATGTTTACAATGCGCGCTGCCAGAGATTATCATAAAGCGAACGTGCATGCCAAAGGACCTAGATACGAATGTCCGCACTGTGACATGAGATTCTCTGCATACTATGACAGGATGAATCACCTAAATCAAGCGCATAGAGCTAAAGAGGTCGCCTATGAATGCTCCTACTGTGATAAAACATTTAAAACTAGTGGCCAGCGTTCGGGTCATATCAAGAGAGAGCATTTTCCGCAGCAGCGGAACTATAATTGTGATTATTGCGAATGGCACTTTAAAACAAACTATGAATTGAAACGGCATATGATTAAGCATTCGGGGCCTAACGCGGGTACTCGGGCTAAAGGTAGACAGTTAAAAGAGCATGTCAGCGCTCGCCAAATGCTTAGGCGTCGACGTGCTAATAACGAAATCCCAGAAGAGTCAGAGAGACGCATCGCAAAGACTATGATGCAAAGAAACGCGATACTCCTCTTGGAGTGTTCCACAGCTTGGCCATTTCGGTGGTTCCGATGCGCGTATTACTGCTCCTACTGTGATATCAAATTCCTTGAACCAAATGATTTGCGGGATCATATAAGCTCCAACCATTTACACCAGCGACCCACCAAAAAGCTCTTCGCAAAGCTCACAGAGAATAATATGCTGAAAGTCGAAATTTCTGACTTGAAGTGCAGACTTTGTGGGATTAGTTTTAATGCTTTTGACGGCTTCAAGGAGCATTTGGTTTTGGTGCATCAGAAAAAGTTGAACGCTAATTATAGCGATGGTGTGCTTCCGTTTAAGCTCAGCTCCAATGATTTCAAATGCCCCAAATGTCATATACGGTTTGCGTGTTTCTCGAAGATGAACGAGCATATGAACAGCCATTTTAGGAATTATATTTGTGATACTTGTGGGAAAGGGTTTGTGACGAAATCCCGGTTTCGAGGTCACGTTCAATCTCATGAAGTTGGTAGTTTCCCTTGCGGTGTCTGTGATGAGGTCTTGGAGACGAGAACGGCTCGTATGTGTCATAGAGTGAAGATCCATCTTAAAGGTGTTAAATATGCATGCCCACGCTGTCCGGAAGTGTTTAGCAAATATAACGCGCGTCTCAAACATTTAGTTGAGAAACATGGGCAGCAGAAAATTTATTATCCCTGCGTTCATTGTGAAAAGGTATTCGAGACGAGTTGCAATCGATCAGCCCACTATAGGACGTCGCATGGAATCGGAAGGAAGTGTTCGGATTTGAATCACTCTTGGAATGATAAATGCGATAGACCAGACAATAAGCAACCAACGAAACTATTATGGAAACAGAAAAGGAAATTTAACGATCAAAGAGACAACGCGGCTGTAGTTCTTGAGTGTTCTAACGCTTGTCCGTTTAGGTGGCGACGTGGATGTTATACCTGCGCGTTCTGTCCGAAAAATTTTGCCGATTTCGAGTCTATAAAAGAACACTCTATAGAGCATCCAAACAAAGTCGATGCACTTAAATTCGCGCGTACTTTTGACTATGTGAAAGTTGAAGTAACAAATTTGCAATGTAACATATGCCGTGAACCAATGCCGGATTTGGATAATTTGAAAGACCACCTCGTGATGGTTCATCAGAAACCTGTCGTCAAAGAGTTAGATTTAGGTGTCACACCGTTTTTACTGATGAACAAAGAGCTCTCATGTACACACTGCGGCGAACGATTTCTGCAATTCACAAAATTAAATACACACATGAATCAACATTATCCAAATAATATTTGTTGTCACTGCGGTAAAGCGTTTTCTGCCGCCCATAGATTGAAAGCACATCAAATAATACACGAAACAGATAATAATAAATGTACGAGGTGCGATAAAGTATTCGATACCAGAGTTCAATTCAATAGGCACGTTTATTTAACGCACACATCGGAATTTAGGTATCGTTGCCCCTACTGTAATGAAGTGTTCAAAACGTATTCGGAACGTTTGAAGCATTTGAAAAACTCGCACGGTAAAAAAGTCGAATATCCATGCAACTTTTGCCCAAGAGTATTTTCTATGTACAATCAGAGGACTAGACATATACAGCAGGTCCATATTAAACATAGGCCGTTTCTCTGCGAACAGTGTCCGTACAAGTTTGGAACCGCCGCACAGCTTAGGAATCATATGGTGAAGCATGAGGGCGAGAGGAAATTTCAATGCGAAGTCTGTAAGAAAATGTATGCGAGGATGAAGACACTGAAAGAGCACATGCGAATTCACAATAATGACAAACGAGAAGCTGAGCTTAAAGAGGAAGATAACGATTACACAGCAATAAAGAGTAATGATGACATTAACAAGAGACTAGAAGGTAACGCGCGACGGGCAATGTTCAGAAAGAATATAAAAACTATTCTTACTACATGCACTGCCTACCCGTTTAAGTACAGAAAGGGGGCGTACCTATGTTTCTTTTGCAAAAGTAGCTTCCTGGAGCCACAATTATTAAGAGAACATTCACAAAGACATCACTCGGATATAGCTTTCAAACCACGGAAATACGATCCGCTGAAAATGGATTTCTCTGTCACAGTTTGCAGACTCTGCGGCGTTGATATAAAAGATTATTCGGAATTAAAAATACACTTGAGGGTACACGGCAAAAGTATCGATTGCACGTACGGCGAGTGTATTTTGCCGTACAAATTGAGTAAGGACGAATATTGCTGTCAAGTTTGCGGTAAACGATATGAAATGTTTCTAAGCCTACACAAACATATGAACGACCATTACGAGCATTATATTTGTGAGACTTGCGGCAAAGGGTTTGCAACGATTCAGAGGATGTTGAATCACTCCCGTACACATGAGAAAGGTAGTTTCCCATGCAAGCATTGTGGTGAACTTCTCCAATCGTACGCTGGTCTGTACGCACATATAGCGAAAGTACATAAGTCGAATAAGCGTTACAAATGTCCTATTTGCGACGAGAAATTCTCCTCCTACAAGTATAGGATGAAACACTTGAACACGATACATAATGAAAAGACTGCACTATTTCCTTGTCCATCGTGCCCCAAAGTTTTCGACCTGTGTAGTCGAAGGACAGCGCACATCCGCTCCCAACACTTGCAGGAGAGGAACCACGCCTGTTCCACATGTGGAATGAAGTTCTTTTCCAACTACGAACTGCAAGAGCACAGTATTAAACACGGTGGCGCCAGGATATACCAGTGTGATGTCTGCAAAAAGTCCTATGCGCGTTTGAAAACTTTAAGGGAACATATGAGAATTCATAATAATGATAGGAGATTCGTCTGCCCCATTTGTGGACAATCGTTTATACAGAAGTGTAGTTTGAAGCAACACGTGAGGGTTCATCATCCAATGCAGATTAAAGATGGCTTCTAA
Protein Sequence: MKKNATTILECWGIIPFRWKKNHFKCAFCENIFTCCIELREHVKICSTHHSVKDIYSKFKEMSLINVDVTNAVCRLCACPFYSVPQMRQHVIEHGLDFDSSHPDGVLPFGLDNNLWSCLICRVKFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHLKGSFPCEKCGRMFTMRAARDYHKANVHAKGPRYECPHCDMRFSAYYDRMNHLNQAHRAKEVAYECSYCDKTFKTSGQRSGHIKREHFPQQRNYNCDYCEWHFKTNYELKRHMIKHSGPNAGTRAKGRQLKEHVSARQMLRRRRANNEIPEESERRIAKTMMQRNAILLLECSTAWPFRWFRCAYYCSYCDIKFLEPNDLRDHISSNHLHQRPTKKLFAKLTENNMLKVEISDLKCRLCGISFNAFDGFKEHLVLVHQKKLNANYSDGVLPFKLSSNDFKCPKCHIRFACFSKMNEHMNSHFRNYICDTCGKGFVTKSRFRGHVQSHEVGSFPCGVCDEVLETRTARMCHRVKIHLKGVKYACPRCPEVFSKYNARLKHLVEKHGQQKIYYPCVHCEKVFETSCNRSAHYRTSHGIGRKCSDLNHSWNDKCDRPDNKQPTKLLWKQKRKFNDQRDNAAVVLECSNACPFRWRRGCYTCAFCPKNFADFESIKEHSIEHPNKVDALKFARTFDYVKVEVTNLQCNICREPMPDLDNLKDHLVMVHQKPVVKELDLGVTPFLLMNKELSCTHCGERFLQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKAHQIIHETDNNKCTRCDKVFDTRVQFNRHVYLTHTSEFRYRCPYCNEVFKTYSERLKHLKNSHGKKVEYPCNFCPRVFSMYNQRTRHIQQVHIKHRPFLCEQCPYKFGTAAQLRNHMVKHEGERKFQCEVCKKMYARMKTLKEHMRIHNNDKREAELKEEDNDYTAIKSNDDINKRLEGNARRAMFRKNIKTILTTCTAYPFKYRKGAYLCFFCKSSFLEPQLLREHSQRHHSDIAFKPRKYDPLKMDFSVTVCRLCGVDIKDYSELKIHLRVHGKSIDCTYGECILPYKLSKDEYCCQVCGKRYEMFLSLHKHMNDHYEHYICETCGKGFATIQRMLNHSRTHEKGSFPCKHCGELLQSYAGLYAHIAKVHKSNKRYKCPICDEKFSSYKYRMKHLNTIHNEKTALFPCPSCPKVFDLCSRRTAHIRSQHLQERNHACSTCGMKFFSNYELQEHSIKHGGARIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPICGQSFIQKCSLKQHVRVHHPMQIKDGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01203427;
90% Identity: iTF_01204246;
80% Identity: -