Pmad014657.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000066.1:1830989-1835519[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.067 4.1 7.9 2.7 3 23 118 138 116 138 0.95 2 27 0.016 0.98 9.9 0.1 1 23 142 164 142 164 0.95 3 27 0.048 3 8.4 0.2 1 15 169 183 169 192 0.78 4 27 0.0017 0.1 13.0 1.2 1 23 198 221 198 221 0.96 5 27 0.0001 0.0064 16.8 2.6 1 23 228 251 228 251 0.98 6 27 8.3e-06 0.00051 20.2 3.4 1 23 258 280 258 280 0.97 7 27 0.0018 0.11 12.9 0.4 1 23 350 373 350 373 0.98 8 27 0.049 3 8.4 0.2 2 23 400 422 399 422 0.90 9 27 0.00016 0.0097 16.2 3.2 1 23 444 466 444 466 0.99 10 27 2.4e-05 0.0015 18.8 0.5 1 23 470 492 470 492 0.98 11 27 0.063 3.9 8.0 0.2 1 22 526 547 526 549 0.87 12 27 0.0079 0.49 10.9 3.7 1 23 556 579 556 579 0.97 13 27 0.056 3.4 8.2 0.3 1 23 642 664 642 664 0.92 14 27 0.063 3.9 8.0 0.0 2 23 688 710 687 710 0.93 15 27 0.014 0.87 10.1 3.2 2 23 733 754 732 754 0.96 16 27 0.0061 0.38 11.2 3.3 3 23 760 780 759 780 0.96 17 27 0.00044 0.027 14.8 1.4 2 23 786 808 785 808 0.91 18 27 4.9e-05 0.003 17.8 1.8 1 23 814 837 814 837 0.97 19 27 0.0042 0.26 11.7 0.1 2 23 941 962 940 962 0.96 20 27 0.038 2.4 8.7 4.8 1 23 984 1006 984 1006 0.97 21 27 0.0033 0.2 12.1 0.4 1 23 1010 1032 1010 1032 0.98 22 27 0.099 6.1 7.4 0.1 1 23 1037 1060 1037 1060 0.95 23 27 4e-05 0.0025 18.1 1.5 1 23 1066 1089 1066 1089 0.98 24 27 0.0076 0.47 10.9 0.9 1 23 1096 1119 1096 1119 0.97 25 27 0.0029 0.18 12.2 2.0 1 23 1125 1147 1125 1147 0.94 26 27 1.2e-06 7.1e-05 22.9 1.0 1 23 1153 1175 1153 1175 0.99 27 27 1.3e-06 8e-05 22.8 2.6 1 23 1181 1203 1181 1204 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAGAACGCAACCACTATATTAGAATGTTGGAGAATCACACCTTTTAGGTGGAAGAAGAATCATTTTAAGTGTGCGTTCTGCGAGAATATCTTCACGTGTTGTACCGAATTACGGGAGCACGTTAAAATATGTTCGACGCATCACAGCGTGAAAGATATATACAGCAAGTTTAAGGAAATGTCCCTGATTAATGTGGACGTCACAAACGCAGTGTGTAGGCTCTGTGCATGTCCCTTTTACAGCGTTCCCCAAATGAGACAACATGTTATTGAACACGGCCTCGATTTCGATAGTTCTCATCCGGATGGCGTCCTCCCGTTCAGTCTAGATAACAACCTATGGTGCTGCCTGATATGCCGAGAGAAATTCAACAATTTCCTTAAATTATATGAACATATGAATACGCATTATCAGCATTATATATGTGCAACTTGCGGTAAAGGATACATGACTGCGCCAAGGTTGAGAAAGCATTCAGAAGTTCACTTAAAGGGGTCGTACCCTTGTGACAAGTGCGGGCGTATGTTCACAATGCGTGCAGCTAGAGATTACCATAAGGCCAACGTGCACGCCAAAGGTCCTAGATACGAATGCCCGCATTGTGATATGAGGTTCTCTGGATACTATGATAGGATGAATCACCTAAACCAAGCCCATAGAGCCAAAGAAGTAGCATACGAATGctcccactgtgaaaaaacatttaaaactagTGGCCAGCGTTCGGTTCATGTTAGGAGAGAACATTTTCCACAGCAAAGGAACTATAATTGTGATTATTGCGAATGGcactttaaaacaaattatgagTTGAAACGGCATATGGTCAAGCATTCGGGTTCCTCTATTGCGGATACTCGGGATAAAGGTAGAAAGTTAAAAGAGCACGTCAGCGCTCGCCAAATGCTCAGGCGACGACGTGCGAATAACGAACTCCCGGAAGAGTCAGAGAGACGCATCGCTAAAACTATGATGCAAAGAAATGCGATAGCGCTCTTGGAATGTTCAACCGCTTGGGCATTTCGATGGTTCCGATGCGCGTACTATTGCTCCTACTGTGATATTAAATTCTTAGAACCAAATGATTTACGTGATCATATACGCTCCAACCATTTACACCAAAAACCCACCAAAAAACTATTTGCAAAGCTCACAGAGAATAATATGCTTAAAGTTGAAATTTCTGACTTAAAGTGCAGGCTCTGCggtcttaattttaatactattgACGGTTTCAAAGAGCACTTGGTTTTGGTGCATCAGAAAAAGTTGTACCCTAATTATAGCGATGGCGTACTGCCATTTAAGCTTAGCTCCAATGATTTTAAATGCCCCAAATGTCATATACGTTTTGCATCTTTCTCGAAAATGAATGAACATATGAACAGCCATTTTAGAAACTATATTTGTGATACGTGTGGCAAAGGATTTGTGTCGAAATCCCGGTTTAGAGCTCACGTTCAATCTCATGAAGTTGGTAGTTTTCCTTGTGGTGTATGTGATGAGGTCTTGGAGACGAGAACAGCTCGTATGTGTCACAGAGTAAAGGTCCATCTTAAAGGTGTTAAATACGCTTGCCCACGCTGTCCCGAAGTGTTTACTAAGTATAACGCGCGTCTCAAACATTTAGTAGAGAAACATGGCCagcagaaaatttattatcccTGTGTTCATTGTGGAAAGTTATTCGAGACAAACTGCAATAGATCAGCTCACTATAGAATGTCTCATAAAGTTGGAAAGAAGTGTTCGGATTTGAATAATTCTTGGAATGATAAACGCGCGGATAgaCCAGACACTAAACCACCAACGAAATTATTATGGAAACAGAAAAGGAAATTTAACGATCAAAGAGACAACGCGGCTATTATTCTTGAGTGTTCTAACGCTTGCCCGTTTAGGTGGAGACGTGGATGTTATACCTGCGCGTTCTGTCCGAAAAATTTTGCAGATTTCGAGAGCATAAAGGAACATTCTATAGAACATCCAAACAAAGTGGATGCTCTTAAATTCGCGCGTACTTTTGACTACGTTAAAGTTGAAGTGACAAATTTACAATGTAACATATGCCGTGAAGCGATGCCGaatttagataatttaaaagacCACCTCGTGGTGGTGCATGAGAAACCTGTCATCAAAGATTTAGATTTAGGCGTTACACCATTTTTACTGATGAATAAAGAGCTGTCTTGTACACATTGTGGCGAACGATTTCTCcaatttactaaattaaacaCACACATGAATCAACATTATCCAAACAATATTTGTTGTCACTGCGGCAAAGCGTTTTCTGCAGCCCATAGACTAAAAGCTCATCAAGTAATACACGAaacagataataataaatgtactaGATGCGATAAGGTATTCGAAACTAGAGTGCAATTTAATAGACACGTTTATTTAACGCACACATCGGAGTTTAGGTATCGTTGCCCCTATTGTAATGAAGTGTTTAAAACGTACTCGGAACGTCTAAAGCATTTGAAAAACTCGCATGgAGGAAAAGCTGAGCTTAAAGAGGAAGAAATTACTGATTACACAGCAATAGCAAGTAATGACGACATTATAAACCGGAGAGTAGAAGGAAACGCGCGACGGGCAATGTTCagaaagaatataaaaaatattctaacttCATGCACTGCGTACCCGTTTAAGTACAGAAAAGGGGCTTATCTCTGTTTCTTTTGTAAAAGTAGCTTCCTGGAGCCACAGTTGTTAAGAGAACATTCTCAAAGGCATCACTCAGATATAGCTTTCAAACCACGTAAATACGACCCCCTAAAAATGGATTTCTCTGTCACAGTCTGCAGACTCTGCGGCGTTAATATAAAAGATTATTcagaattaaaaattcatttgaGAATTCACGGCAAAAGTATCGATTGTACGTACGGTGAGAGCATTTTGCCGTATAAATTGAGTAAGGATGAATATTGTTGTCAAGTCTGCGGTAAACGTTACGAAATGTTTCTTAGCCTACATAAACATATGAACGACCATTACGAGCATTATATTTGTGAAACATGCGGCAAAGGTTTTGCGACGATTCAGAGGATGTTGAATCACTCCCGTACACACGAAAAGGGTAGTTTCCCTTGCAAGCATTGTGGTGAACTTCTCCAATCATACGCTGGGCTATATGCCCATATAGCGAAAGTACATAAAGCGAATAAGCGATACAAATGTCCCATTTGCGACGAGAAGTTCTCCTCCTACAAGTATAGGATGAAACATTTAAACACGATACATAATGAGAAGACTGCCCTATTTCCGTGTCCATCATGCCCCAAAGTTTTCGACCTGTGTAGTCGAAGAACAGCACACATTCGCTCCCAACACTTGCAGGAGAGGAACCACGCCTGTACCACATGTGGAATGAAATTCTTTTCGAATTATGAACTGCAAGAGCACAGTATTAAACACGGTGGCGCTAGAATATATCAGTGTGATGTGTGCAAAAAGTCTTATGCGcgtttaaaaactttaaggGAACATATGAGAATTCATAATAATGATAGAAGATTTGTCTGCCCCATTTGTGGACAATCGTTTATACAAAAATGCAGTCTGAAGCAACACGTGAGAGTTCATCATCCAATGCAGATTAAAGATGGCTTCTAA
- Protein Sequence
- MKKNATTILECWRITPFRWKKNHFKCAFCENIFTCCTELREHVKICSTHHSVKDIYSKFKEMSLINVDVTNAVCRLCACPFYSVPQMRQHVIEHGLDFDSSHPDGVLPFSLDNNLWCCLICREKFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHLKGSYPCDKCGRMFTMRAARDYHKANVHAKGPRYECPHCDMRFSGYYDRMNHLNQAHRAKEVAYECSHCEKTFKTSGQRSVHVRREHFPQQRNYNCDYCEWHFKTNYELKRHMVKHSGSSIADTRDKGRKLKEHVSARQMLRRRRANNELPEESERRIAKTMMQRNAIALLECSTAWAFRWFRCAYYCSYCDIKFLEPNDLRDHIRSNHLHQKPTKKLFAKLTENNMLKVEISDLKCRLCGLNFNTIDGFKEHLVLVHQKKLYPNYSDGVLPFKLSSNDFKCPKCHIRFASFSKMNEHMNSHFRNYICDTCGKGFVSKSRFRAHVQSHEVGSFPCGVCDEVLETRTARMCHRVKVHLKGVKYACPRCPEVFTKYNARLKHLVEKHGQQKIYYPCVHCGKLFETNCNRSAHYRMSHKVGKKCSDLNNSWNDKRADRPDTKPPTKLLWKQKRKFNDQRDNAAIILECSNACPFRWRRGCYTCAFCPKNFADFESIKEHSIEHPNKVDALKFARTFDYVKVEVTNLQCNICREAMPNLDNLKDHLVVVHEKPVIKDLDLGVTPFLLMNKELSCTHCGERFLQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKAHQVIHETDNNKCTRCDKVFETRVQFNRHVYLTHTSEFRYRCPYCNEVFKTYSERLKHLKNSHGGKAELKEEEITDYTAIASNDDIINRRVEGNARRAMFRKNIKNILTSCTAYPFKYRKGAYLCFFCKSSFLEPQLLREHSQRHHSDIAFKPRKYDPLKMDFSVTVCRLCGVNIKDYSELKIHLRIHGKSIDCTYGESILPYKLSKDEYCCQVCGKRYEMFLSLHKHMNDHYEHYICETCGKGFATIQRMLNHSRTHEKGSFPCKHCGELLQSYAGLYAHIAKVHKANKRYKCPICDEKFSSYKYRMKHLNTIHNEKTALFPCPSCPKVFDLCSRRTAHIRSQHLQERNHACTTCGMKFFSNYELQEHSIKHGGARIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPICGQSFIQKCSLKQHVRVHHPMQIKDGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206742; iTF_01204246;
- 90% Identity
- -
- 80% Identity
- -