Prap007489.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990604.1:2884825-2886153[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.14 12.4 0.2 14 43 93 119 84 120 0.90 2 11 0.51 6.1e+02 0.7 0.5 14 29 123 138 121 150 0.76 3 11 0.92 1.1e+03 -0.1 0.4 4 29 142 167 139 172 0.70 4 11 0.00013 0.16 12.2 4.0 5 43 172 207 169 208 0.93 5 11 0.26 3.1e+02 1.7 3.7 16 43 212 236 209 237 0.75 6 11 0.59 7e+02 0.5 3.6 6 44 231 266 227 266 0.72 7 11 0.0003 0.35 11.1 2.9 2 44 256 294 255 294 0.83 8 11 0.00045 0.54 10.5 0.1 17 44 325 349 321 349 0.94 9 11 0.018 21 5.4 0.4 11 28 349 366 348 378 0.86 10 11 0.17 2e+02 2.3 2.5 17 37 383 400 368 406 0.81 11 11 0.0055 6.5 7.0 7.6 5 43 396 435 395 436 0.75
Sequence Information
- Coding Sequence
- ATGGATAACTTAGATATAATAAAAGAAGAGTTTGTTCATGTTAATGTTAAAATTGAACCATGTGAAGAAAGCTATTCAGAATTTGATAGTGTTGATGACAATATTCCACAAGATTCATGTGACTATGAAACTCCTGAAATAAAGGTTAAGGTAGAGATCGTAGAACAAAATTCTGAGGACCAGCATGAAAGTAATCACTTATTACTAGAAGTTGATAGAAAACCAGATTTGCAAGAGCGCTTTCAAGATAGTAACATAGTTGGAGACATAAAGTATGATAAAAGAATTCCGTGCCCAAAATGCGATCGTACTTTAAAAAACCGAGGGAATCTAAAACAGCATCTGCGGACTGTGCACTTAGAAACTTCAGAAAATATAAAATGTCCAGATTGTGAGCGAGTTTTTAAGTCAAGAGAGTATTTGTGGAATCACCAACATTCTGTACATTACAGTATTGCAGAAATGCCCTGTCCAGAGTGTAAGAAAACTTTTACTAATAAAAGACGCTTAGACAATCATTTTTACTACACTCATAAAGATAAAACTCTGGTAACATGTCCAACGTGTGGTAAAAACTTTCAAGGGCAGAGAAAACTGAAACTGCACATGAAACATGTCCACACCTTTAATGAAAATATATTATGCAGTCACTGTCAAAAACGATTTAAAAGTGAGTTACTGCTTAAAAGACATATGGCATATCATCATTCTGATGGTCAGGAATATAAATGTGCCTTCTGTGACAAAATGTTTGACTCAAATATTAAGTACAAAAAACATTTAGAACAAGTTCACCCCGAGCAGCGTATACAATGCCGCATCTGTTCCAAACTTTTAAAATCAGTGCAGATTGCAAAAAAACACTTGAGAATTGTTCATCAATTAAAAGATGGAATCCTTGAAGAGAATTTAGTAAAAGTAGCAAATGATACTATAATAACGAATTTTATGAATGACGTTAAGCCAGTGGAAGTTACTTGTGACTTATGTTTCAAAGTATTTTCTAATCAAAGTGTATTTTATCGACATATAAGATCAACTCACCCATCAAAAGAACAAGAGGTAGCCTGTGATGTATGTAATAAAGTGTTTAAATCACCTCATCATCTAAGAGTTCATAAGGCAGCTGTACATTCCATAAACCAATTTACATGTAGTCTTTGCAATCAAACCTTTTCATCGAAGAAGTATTTAACAAGACATGAGAAAAGGCATAATAAGGTTGAACAACAGTTTGAATGTGATATTTGCAATAAATTTTATAAATGCCGAGAATATTTAAAGAGGCATTTAAGACGTGTGCATGATAATAATATTTTAGGTATTTAA
- Protein Sequence
- MDNLDIIKEEFVHVNVKIEPCEESYSEFDSVDDNIPQDSCDYETPEIKVKVEIVEQNSEDQHESNHLLLEVDRKPDLQERFQDSNIVGDIKYDKRIPCPKCDRTLKNRGNLKQHLRTVHLETSENIKCPDCERVFKSREYLWNHQHSVHYSIAEMPCPECKKTFTNKRRLDNHFYYTHKDKTLVTCPTCGKNFQGQRKLKLHMKHVHTFNENILCSHCQKRFKSELLLKRHMAYHHSDGQEYKCAFCDKMFDSNIKYKKHLEQVHPEQRIQCRICSKLLKSVQIAKKHLRIVHQLKDGILEENLVKVANDTIITNFMNDVKPVEVTCDLCFKVFSNQSVFYRHIRSTHPSKEQEVACDVCNKVFKSPHHLRVHKAAVHSINQFTCSLCNQTFSSKKYLTRHEKRHNKVEQQFECDICNKFYKCREYLKRHLRRVHDNNILGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205121;
- 90% Identity
- iTF_01204272; iTF_01204244; iTF_01206773; iTF_01205925; iTF_01205891; iTF_01205121; iTF_01205091; iTF_01202661; iTF_01202633; iTF_01203450; iTF_01203421;
- 80% Identity
- iTF_01206773;