Prap007489.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris rapae
Gene Symbol
-
Assembly
GCA_905147795.1
Location
LR990604.1:2884825-2886153[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 7e-07 5.4e-05 23.6 0.4 2 23 97 119 96 119 0.96
2 10 3.8e-06 0.0003 21.3 0.9 2 23 127 149 126 149 0.96
3 10 0.00064 0.05 14.3 1.5 2 23 156 178 155 178 0.87
4 10 0.00011 0.0084 16.7 1.9 2 23 185 207 184 207 0.96
5 10 0.00047 0.036 14.7 5.3 3 23 215 235 214 236 0.95
6 10 0.00021 0.016 15.8 1.4 1 23 242 265 242 265 0.95
7 10 2.3e-05 0.0018 18.8 1.0 2 23 326 348 325 348 0.97
8 10 2.1e-05 0.0016 18.9 1.1 3 23 357 378 356 378 0.90
9 10 7.1e-06 0.00055 20.4 4.2 1 23 383 405 383 405 0.98
10 10 0.00045 0.035 14.7 4.6 1 23 412 435 412 435 0.98

Sequence Information

Coding Sequence
ATGGATAACTTAGATATAATAAAAGAAGAGTTTGTTCATGTTAATGTTAAAATTGAACCATGTGAAGAAAGCTATTCAGAATTTGATAGTGTTGATGACAATATTCCACAAGATTCATGTGACTATGAAACTCCTGAAATAAAGGTTAAGGTAGAGATCGTAGAACAAAATTCTGAGGACCAGCATGAAAGTAATCACTTATTACTAGAAGTTGATAGAAAACCAGATTTGCAAGAGCGCTTTCAAGATAGTAACATAGTTGGAGACATAAAGTATGATAAAAGAATTCCGTGCCCAAAATGCGATCGTACTTTAAAAAACCGAGGGAATCTAAAACAGCATCTGCGGACTGTGCACTTAGAAACTTCAGAAAATATAAAATGTCCAGATTGTGAGCGAGTTTTTAAGTCAAGAGAGTATTTGTGGAATCACCAACATTCTGTACATTACAGTATTGCAGAAATGCCCTGTCCAGAGTGTAAGAAAACTTTTACTAATAAAAGACGCTTAGACAATCATTTTTACTACACTCATAAAGATAAAACTCTGGTAACATGTCCAACGTGTGGTAAAAACTTTCAAGGGCAGAGAAAACTGAAACTGCACATGAAACATGTCCACACCTTTAATGAAAATATATTATGCAGTCACTGTCAAAAACGATTTAAAAGTGAGTTACTGCTTAAAAGACATATGGCATATCATCATTCTGATGGTCAGGAATATAAATGTGCCTTCTGTGACAAAATGTTTGACTCAAATATTAAGTACAAAAAACATTTAGAACAAGTTCACCCCGAGCAGCGTATACAATGCCGCATCTGTTCCAAACTTTTAAAATCAGTGCAGATTGCAAAAAAACACTTGAGAATTGTTCATCAATTAAAAGATGGAATCCTTGAAGAGAATTTAGTAAAAGTAGCAAATGATACTATAATAACGAATTTTATGAATGACGTTAAGCCAGTGGAAGTTACTTGTGACTTATGTTTCAAAGTATTTTCTAATCAAAGTGTATTTTATCGACATATAAGATCAACTCACCCATCAAAAGAACAAGAGGTAGCCTGTGATGTATGTAATAAAGTGTTTAAATCACCTCATCATCTAAGAGTTCATAAGGCAGCTGTACATTCCATAAACCAATTTACATGTAGTCTTTGCAATCAAACCTTTTCATCGAAGAAGTATTTAACAAGACATGAGAAAAGGCATAATAAGGTTGAACAACAGTTTGAATGTGATATTTGCAATAAATTTTATAAATGCCGAGAATATTTAAAGAGGCATTTAAGACGTGTGCATGATAATAATATTTTAGGTATTTAA
Protein Sequence
MDNLDIIKEEFVHVNVKIEPCEESYSEFDSVDDNIPQDSCDYETPEIKVKVEIVEQNSEDQHESNHLLLEVDRKPDLQERFQDSNIVGDIKYDKRIPCPKCDRTLKNRGNLKQHLRTVHLETSENIKCPDCERVFKSREYLWNHQHSVHYSIAEMPCPECKKTFTNKRRLDNHFYYTHKDKTLVTCPTCGKNFQGQRKLKLHMKHVHTFNENILCSHCQKRFKSELLLKRHMAYHHSDGQEYKCAFCDKMFDSNIKYKKHLEQVHPEQRIQCRICSKLLKSVQIAKKHLRIVHQLKDGILEENLVKVANDTIITNFMNDVKPVEVTCDLCFKVFSNQSVFYRHIRSTHPSKEQEVACDVCNKVFKSPHHLRVHKAAVHSINQFTCSLCNQTFSSKKYLTRHEKRHNKVEQQFECDICNKFYKCREYLKRHLRRVHDNNILGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01205121;
90% Identity
iTF_01206737;
80% Identity
iTF_01206737;