Pmad014942.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000068.1:1762575-1763909[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0001 0.058 13.3 0.3 6 43 81 120 79 121 0.84 2 11 3 1.7e+03 -1.0 0.5 14 29 124 139 122 151 0.73 3 11 0.93 5.3e+02 0.6 0.4 4 29 143 168 140 173 0.75 4 11 0.00022 0.13 12.2 4.0 5 43 173 208 169 209 0.93 5 11 0.44 2.5e+02 1.7 3.8 16 43 213 237 210 238 0.75 6 11 1 5.8e+02 0.5 3.6 6 44 232 267 228 267 0.72 7 11 0.00051 0.29 11.1 2.9 2 44 257 295 256 295 0.83 8 11 0.00071 0.41 10.6 0.1 17 44 327 351 322 351 0.94 9 11 0.03 17 5.4 0.5 11 28 351 368 350 375 0.85 10 11 0.38 2.2e+02 1.9 2.9 17 37 385 402 370 408 0.81 11 11 0.0045 2.6 8.0 7.5 6 43 399 437 397 438 0.78
Sequence Information
- Coding Sequence
- ATGGATAACTTAGATGTAATAAAAGAAGAGTTTGTTCATGTTAATGTTAAAATTGAACCATGTGAGGAAAACTATTCAGAATTTGATGGTGTTGTTGAAGACAATATTCCACAAGATTCATGCGACTACGAACCTCCTGAAATAAAGGTTAAGGTAGAGATCGTACAACAAAACTCTGAGGACCAGCATGAAAGTAATCACTTATTACTAGAAGCTGATAGAAAACCAGATTTGCAGGAGCACTTTCAAGATAGTAACATAGGTGGAGAcataaagtataataaaagaatTCCGTGCCCGAAATGCGATCGTACTTTAAAAAACCGGGGAAATCTAAAACAGCATCTGCGAACTGTGCACTTAGAAACTtccgaaaatataaaatgccCAGATTGTGATCGAGTTTTTAAGTCGAGGGAGTATTTGTGGAATCACCAACATTCTGTACATTACAGTATTGAGGAAATGCCCTGTCCTGAGTGTAACAAGacttttactaataaaagACGCTTAGACAATCATTTCTACTACACTCATAAAGATAAAACTCTAGTAACATGTCCAACGTGTGGTAAAAACTTTCAAGGACAGCGAAAACTGAAACTGCACATGAAACATGTCCACAcctttaatgaaaatatattatgcacTCACTGTCAAAAACGATTTAAAAGTGAGTTACTGCTTAAAAGACATATGGCATATCATCATTCTGATGGTCAGGAATACAAATGTGCCTTCTGTGACAAAATGTTTGACTCAAATATTAAGTACAAAAAACATTTAGAACAAGTTCACCCTGAGCAGCGTATACAATGCCGCATCTGttccaaacttttaaaatcagTGCAGATTGCAAAAAAACACTTAAGAATTGTTCATCAATTGAAGGATGGAATCCTTGAAGAGAATTTAGTAAAAGTAGCTAATGATACtataataacaaatttcaTTAATGGTGTTGATAAGGCAGTGGAAGTTACTTGTGACTTATGTTTCAAAGTATTTTCCAATCAAAGTGTATTTTATCGACACATAAGATCAACGCACCCATCAAAGGAGCAAGAGGTTTCCTGTGATGTTTGTAATAAAGTGTTTAAATCGCCTCATCATCTAAGAGTTCACAAGGCAGCTGTACATTCCATTAACCAATTTACATGTAGTCTTTGCAATCAAACCTTTTCTTCGAAGAAGTATTTAACAAGACATGAGAAGAGGCACAATAAGATTGAACAACAGTTTGAATgtgatatttgtaataaattttataaatgccGAGAATATTTAAAGAGGCATTTAAGACGTGTGCatgacaataatattttaggtaTTTAA
- Protein Sequence
- MDNLDVIKEEFVHVNVKIEPCEENYSEFDGVVEDNIPQDSCDYEPPEIKVKVEIVQQNSEDQHESNHLLLEADRKPDLQEHFQDSNIGGDIKYNKRIPCPKCDRTLKNRGNLKQHLRTVHLETSENIKCPDCDRVFKSREYLWNHQHSVHYSIEEMPCPECNKTFTNKRRLDNHFYYTHKDKTLVTCPTCGKNFQGQRKLKLHMKHVHTFNENILCTHCQKRFKSELLLKRHMAYHHSDGQEYKCAFCDKMFDSNIKYKKHLEQVHPEQRIQCRICSKLLKSVQIAKKHLRIVHQLKDGILEENLVKVANDTIITNFINGVDKAVEVTCDLCFKVFSNQSVFYRHIRSTHPSKEQEVSCDVCNKVFKSPHHLRVHKAAVHSINQFTCSLCNQTFSSKKYLTRHEKRHNKIEQQFECDICNKFYKCREYLKRHLRRVHDNNILGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205121;
- 90% Identity
- iTF_01206737;
- 80% Identity
- iTF_01203450;