Pnap015685.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997707.1:8694869-8700206[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.6e-05 0.0058 17.5 2.0 1 23 81 104 81 104 0.98 2 18 0.00029 0.025 15.5 1.5 1 23 113 136 113 136 0.96 3 18 0.0095 0.82 10.7 0.4 2 23 149 171 149 171 0.97 4 18 0.00029 0.025 15.5 3.0 1 23 180 203 180 203 0.97 5 18 0.012 1 10.3 2.1 1 23 214 237 214 237 0.95 6 18 3.9e-05 0.0034 18.2 2.3 2 23 265 287 264 287 0.96 7 18 0.00027 0.024 15.5 1.3 2 23 297 319 296 319 0.96 8 18 0.99 86 4.3 0.9 2 19 324 341 323 343 0.88 9 18 0.00059 0.051 14.5 0.2 2 21 349 368 349 371 0.94 10 18 0.22 19 6.4 2.1 3 23 381 402 379 402 0.91 11 18 0.00087 0.076 13.9 4.6 1 23 407 430 407 431 0.97 12 18 0.13 12 7.1 1.5 3 19 442 458 440 463 0.93 13 18 7.9e-05 0.0069 17.2 0.6 1 23 504 527 504 527 0.94 14 18 1.1 96 4.2 0.6 2 23 534 554 533 554 0.86 15 18 0.014 1.2 10.2 1.8 2 23 560 581 559 581 0.97 16 18 1.5 1.3e+02 3.7 1.3 3 23 589 611 587 611 0.90 17 18 0.11 9.1 7.4 0.0 1 23 647 669 647 669 0.96 18 18 0.14 12 7.0 2.0 1 23 675 698 675 698 0.96
Sequence Information
- Coding Sequence
- ATGTTTCCGGTGCGCCGATGTGCTGCTCGACCGAATAGAAGACACAAGCCACACTCACGCCAATTTGCAAATGATAATGGTCTTATGGTTGAAGGACCATATAGTGATGATGGACAGCCTGAAGCTTTTGACAAACTTGGACAAGAAAACAAAAAAGGGGATGTATTACGCACTTTTCAAAATATTATTAACGATAAACCGTCCGTTGAAATACCAGATAACTCAGACATGGCTCCTAATTATGTTTGCAAGGTGTGCCATCTAGTCTTTCAATCACCTAAAACTTTAATAATGCATCAGAGAAGAAAACATAAGGTATTCCGAAGGTCTTTCAAACACATATGTGATTACTGTAGTATGTCATATGAAACAAAAAATAGTCTTGTTGCTCATATTAAAAGAAAACACGGACCAGATTCAACACAAGATGATGGAGAGGAAAGGACATGTGAAATTTGTGCATTAGTTTTCAAAGGCATGGGTAGATTACGCATGCATATGCGGAGAAAACATGGTTCTTTTAAAGAATCTTTTAAACATGTTTGCAAGGAGTGTGGTCTTACTTATGAAAAACATAGAAGTTTGATTGTGCATATAAGAAGAAAGCATTCAGGAATCATTAAAGTGGAAGATCGATATTTCAATTGTCCATTTTGTCCAATGGTTTATAATAAACGTGAAACATATGCAAGACATGTACATAGAAAGCATAGAAGAAGTGATGATGATTCTAATCGTAAGCTAAATAATGATATTATGGGAAACATAAAAAATACAGAAACTGGTGAACTATGTTGCACTGAATGTCCATTAGTGTTTTCAACATTAACTTATTTGAAGTTGCATATGCGAAGAAAGCACAATGCTATGAAAGAAGATTTTCGTCTGAAATGTAAAATATGCAATTTATCCTATGATAAAATTGAGAGTCTGAAAAGACATGTGCGTAGAAAACATGACAAGGTGACATATTGTGATATCTGTAGAAGACAATTTGACACACACGAGGCTTACTTAGGCCACACGCATGCTAAGATTGCAAGAGAGTGTCCGGTTTGTGGCCTTATTTTTGCATCGCAAAGTGGATTAGGCAAACATCTACGTTGTGCACATGAAATTGCTAAGCCGAAGACAGTTATTTGTCACCTTTGTAATGCAGCTTTTCATACCAAGAGACAATTGAAACCTCACTTTTTACGAGTACATTTAAAAGTATCCTATACATGTCAATTCTGTAAAAAAGTGTTAAAGTCAAAAGAAACTTATACACGACATATACTTATGAAGCATCATAACGATAAACCCTCTAGTGAGTTACAAATATGTGAACATTGTGCTGCTACATTTTCAAATGAATTGGAACTAAGACGACATTGCAGTGAAGTACATAACACAAATGAACTAAATGATTCAGATGATGTTGTATTAAAAAACGAATTAGAAACCGATGTTGCTAAGGTATCCAGTGATATTGTTATAAAAAAAGAAGAAGTTGATATACCAACAAAATATCAGTGTACAAAATGCCCAGAATTTTATCCCAATTGGGATCAATTAAAATTGCATTATGAACAAAATCATTATGTGGCTAAGGAAACACAATGTCAACTTTGTGGGAAGTTGGTGCCAGATAATGAATTAGCAAAGCACATCAAATCACATAATGATACAACATTACGATGCAGGTATTGCAATTTCTCTTCAAACAATAGGGCAAGTATGACTCAACATTTGCTGAGACACAAAAATGCAACAACAATTAATTGTAGCTTTGAAAACTGCAAATATAAAACTTTTTATGAAGATGCAATGGAGAAACATAAGAGAAAACATATTGATCAAGGTGTAAAACTTCAATGTACACAGTGCCCTTTTCAAACGATGAATAAATATATTTTAAAGTATCACGAAGAAGCACATGTAACTGGAAAGAAACGTTATGCATGTGATCAATGTGATTATGCTACCATACTACCAGCGGCATTAGTTCAACATAAATATAAACATTCCACAGAAAAGAGATTTAAGTGTGAGGTGTGCCCATTTGCTACCAAGTACAATACGTCACTTCGTTTTCACGTTAAAAAGAAGCACTGTGATCTTCCTTCATGA
- Protein Sequence
- MFPVRRCAARPNRRHKPHSRQFANDNGLMVEGPYSDDGQPEAFDKLGQENKKGDVLRTFQNIINDKPSVEIPDNSDMAPNYVCKVCHLVFQSPKTLIMHQRRKHKVFRRSFKHICDYCSMSYETKNSLVAHIKRKHGPDSTQDDGEERTCEICALVFKGMGRLRMHMRRKHGSFKESFKHVCKECGLTYEKHRSLIVHIRRKHSGIIKVEDRYFNCPFCPMVYNKRETYARHVHRKHRRSDDDSNRKLNNDIMGNIKNTETGELCCTECPLVFSTLTYLKLHMRRKHNAMKEDFRLKCKICNLSYDKIESLKRHVRRKHDKVTYCDICRRQFDTHEAYLGHTHAKIARECPVCGLIFASQSGLGKHLRCAHEIAKPKTVICHLCNAAFHTKRQLKPHFLRVHLKVSYTCQFCKKVLKSKETYTRHILMKHHNDKPSSELQICEHCAATFSNELELRRHCSEVHNTNELNDSDDVVLKNELETDVAKVSSDIVIKKEEVDIPTKYQCTKCPEFYPNWDQLKLHYEQNHYVAKETQCQLCGKLVPDNELAKHIKSHNDTTLRCRYCNFSSNNRASMTQHLLRHKNATTINCSFENCKYKTFYEDAMEKHKRKHIDQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYACDQCDYATILPAALVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879060;
- 90% Identity
- iTF_01205150; iTF_01203488; iTF_01202714; iTF_01206802; iTF_00879060;
- 80% Identity
- -