Prap003933.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- Zfy1
- Assembly
- GCA_905147795.1
- Location
- LR990597.1:3394855-3399485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.3e-05 0.0048 17.4 2.9 1 23 154 177 154 177 0.98 2 18 0.0003 0.023 15.3 1.5 1 23 186 209 186 209 0.96 3 18 0.0099 0.76 10.5 0.4 2 23 222 244 222 244 0.97 4 18 0.0003 0.023 15.3 3.0 1 23 253 276 253 276 0.97 5 18 0.013 0.97 10.2 2.1 1 23 287 310 287 310 0.95 6 18 4.1e-05 0.0032 18.0 2.3 2 23 338 360 337 360 0.96 7 18 0.00028 0.022 15.4 1.3 2 23 370 392 369 392 0.96 8 18 1 78 4.2 0.8 2 19 397 414 396 416 0.88 9 18 0.00061 0.047 14.3 0.2 2 21 422 441 422 444 0.94 10 18 0.25 20 6.1 2.3 3 23 454 475 452 475 0.91 11 18 0.00091 0.07 13.8 4.6 1 23 480 503 480 504 0.97 12 18 0.14 11 6.9 1.5 3 19 515 531 513 536 0.93 13 18 8.2e-05 0.0064 17.1 0.6 1 23 576 599 576 599 0.94 14 18 4.7 3.6e+02 2.1 0.6 2 23 606 626 605 626 0.77 15 18 0.0055 0.43 11.3 1.0 2 23 632 653 631 653 0.97 16 18 3.6 2.8e+02 2.5 1.4 3 23 661 683 659 683 0.90 17 18 0.089 6.9 7.5 0.0 1 23 719 741 719 741 0.96 18 18 0.14 11 6.9 2.0 1 23 747 770 747 770 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAAATAGAAGAAAATACTTTAGACATTAAGAAAAAAGGAAAAAATTATGAAAGAAAAGATCCTACATCATTCTTGCCAGAAGAGCCTATGTCCTATGAAATCAAACCAAAAAAGAAAAAAAAGAAAAAGAATATAGAAGATCCTTTTAAAGACATTGAGGAAAAGGTTAAACTTCCCACAGTAACTGTATTTGATCCTACATCTGATTCTGCGTTAGATCCAGAAGTTTCTATTAAAGTTGAAAATATTGAAGTAGAGCTAGACTTCAATGATTTTGCAAATGATAATGGTCTTATGGTTGAAGGACCATGTAGTGATGATGGACAGCCTGAACCATTTGTTAAACTTGGACAAGATCGAAACGAAAAAGAGGCTGTGCTACTCACTTTTCAAAATATTATTAATGATAAACCAGCCATTGAAATACCAGATAACTCAGATATGGCTCCTAATTATGTTTGCAAGGTGTGCCATCTAGTCTTTCAATCACCTAAAACTTTAAGAATGCACCAGAGAAGAAAACATAAGGTATATCGAAGATCTTTCAAACACATATGCGATTATTGTAGTATGTCATATGAAACAAAAAATAGTCTTGTTGCTCATATTAAAAGAAAACATGGACCAAATTCAACACAAGATGACGGAGAGGAAAGGACATGTGAAATTTGTGCATTAGTTTTTAAAGGTATGGGTAGATTACGTATGCATATGCGGAGAAAACATGGTTCTTTTAAAGAATCTTTTAAACATGTTTGCAAGGAGTGTGGTCTTACGTATGAAAAACATAGAAGTTTGATTGTGCACATAAGAAGAAAGCATTCCGGAATCATAAAAGTAGAAGATCGATATTTCAATTGTCCATTTTGTCCAATGGTTTATAATAAACGTGAAACTTATGCAAGACATGTACATAGAAAGCATAGAAAAAGTGATGATGATTCTAATTGCAAGCTAAATAGTGATATTATGGGTAACATAAAAAATACAGAAACAGGTGAACTTTGTTGCACTGAATGTCCGTTGGTGTTTTCAACATTAACTTATTTGAAATTGCATATGCGAAGAAAGCACAATGCTATGAAAGAAGATTTTCGTTTGAAATGTAAAATATGCAATTTATCTTATGATAAAATTGAGAGCCTAAAAAGACATGTGCGTAGAAAACATGACAAGGTGACATATTGTGATATCTGTAGACGACAATTTGAGACACATGAGGCTTACTTAGGCCACACGCATGCTAAGATTGCAAGAGAGTGTCCAGTTTGTGGGCTTATTTTTGCATCGCAAAGTGGATTAGGCAAACATCTACGTTGCGCACATGAAATCGCTAAACCGAAGACAGTTATTTGTCACTTATGTAATGCAGCTTTTCATACCAAGAGACAATTAAAACCTCACTTTTTACGAGAACATTTAAAAGTATCCTATACATGTCAATTTTGTAAAAAAGTGTTAAAGTCAAAAGAAACTTATACACGACATATACTTATGAAGCATCATAACGATAAACCTGCTAGTGATTTACAAATATGTGAACATTGTGCTGCTACATTTTCAAATGAATTAGAACTTAGACGACATTGTAGTGAAGTACATAAAACAAATGAAATAAATGATTCAGATGTTGTAGTAAAAAACGAATTAGACTCTGATGTTGGAAAGGAATCCAGTGATGTTGTTATAAAAAAAGAAGAAGTTGATATACCAACAAAATACCAGTGTACAAAATGCCCAGAATTTTATCCCAATTGGGATCAATTAAAATTACATTATGAACAAAATCATTATGTGGCTAAGGAAACACAATGTCAACTTTGTGGAGAATTGGTGCCAGATAATGAATTAGCAAAGCACATCAAATCACATAATGATACAACAGTACAATGCAGGTATTGTGATTTCTCTTCAAACAATAGGGCGAGTATGACCCAACATTTGCTGAGACACAAAAATGCAACAACAATTAATTGTAGTTTTGAAAACTGCAAATATAAAACATTTTATGAAGATGCAATGGAGAAACATAAGAAAAAACACATTGATCAAGGCGTAAAACTTCAATGTACACAGTGCCCTTTTCAAACAATGAATAAATATATTTTAAAGTATCATGAAGAAGCACATGTAACTGGAAAGAAACGTTATGCATGTGATCAATGTGATTATGCTACCGTGTTACCAGCAGCATTAGTTCAACATAAATATAAACATTCCACAGAAAAGAGATTTAAGTGTGAGGTCTGCCCATTTGCTACCAAGTACAATACGTCACTTCGTTTTCACGTTAAAAAAAAGCACTGTGATCTGCCTTCATGA
- Protein Sequence
- MSKIEENTLDIKKKGKNYERKDPTSFLPEEPMSYEIKPKKKKKKKNIEDPFKDIEEKVKLPTVTVFDPTSDSALDPEVSIKVENIEVELDFNDFANDNGLMVEGPCSDDGQPEPFVKLGQDRNEKEAVLLTFQNIINDKPAIEIPDNSDMAPNYVCKVCHLVFQSPKTLRMHQRRKHKVYRRSFKHICDYCSMSYETKNSLVAHIKRKHGPNSTQDDGEERTCEICALVFKGMGRLRMHMRRKHGSFKESFKHVCKECGLTYEKHRSLIVHIRRKHSGIIKVEDRYFNCPFCPMVYNKRETYARHVHRKHRKSDDDSNCKLNSDIMGNIKNTETGELCCTECPLVFSTLTYLKLHMRRKHNAMKEDFRLKCKICNLSYDKIESLKRHVRRKHDKVTYCDICRRQFETHEAYLGHTHAKIARECPVCGLIFASQSGLGKHLRCAHEIAKPKTVICHLCNAAFHTKRQLKPHFLREHLKVSYTCQFCKKVLKSKETYTRHILMKHHNDKPASDLQICEHCAATFSNELELRRHCSEVHKTNEINDSDVVVKNELDSDVGKESSDVVIKKEEVDIPTKYQCTKCPEFYPNWDQLKLHYEQNHYVAKETQCQLCGELVPDNELAKHIKSHNDTTVQCRYCDFSSNNRASMTQHLLRHKNATTINCSFENCKYKTFYEDAMEKHKKKHIDQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYACDQCDYATVLPAALVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879060;
- 90% Identity
- iTF_01205957;
- 80% Identity
- -