Pmad010243.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000030.1:3100467-3104680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.1e-05 0.0044 17.3 2.0 1 23 153 176 153 176 0.98 2 18 0.00031 0.019 15.3 1.5 1 23 185 208 185 208 0.96 3 18 0.01 0.63 10.5 0.4 2 23 221 243 221 243 0.97 4 18 0.00031 0.019 15.3 3.0 1 23 252 275 252 275 0.97 5 18 0.013 0.8 10.2 2.1 1 23 286 309 286 309 0.95 6 18 4.2e-05 0.0026 18.0 2.3 2 23 337 359 336 359 0.96 7 18 0.00029 0.018 15.4 1.3 2 23 369 391 368 391 0.96 8 18 1.1 65 4.2 0.9 2 19 396 413 395 415 0.88 9 18 0.00063 0.039 14.3 0.2 2 21 421 440 421 443 0.94 10 18 0.23 14 6.3 2.1 3 23 453 474 451 474 0.91 11 18 0.00094 0.058 13.8 4.6 1 23 479 502 479 503 0.97 12 18 0.15 9.2 6.8 1.5 3 19 514 530 512 535 0.94 13 18 4.4e-05 0.0027 18.0 1.6 1 23 576 599 576 599 0.94 14 18 4.8 2.9e+02 2.1 0.6 2 23 606 626 605 626 0.77 15 18 0.012 0.75 10.3 0.9 2 23 632 653 631 653 0.97 16 18 1.6 1e+02 3.6 1.3 3 23 661 683 659 683 0.90 17 18 0.11 6.9 7.2 0.0 1 23 719 741 719 741 0.96 18 18 0.15 9.1 6.9 2.0 1 23 747 770 747 770 0.96
Sequence Information
- Coding Sequence
- atgtcTAAAATAGAAGAAAGTACTGTAGACTTTaagaaaaagggaaaaaattatGAACGAAAAGATCCTACATCATTCTTGCCAGAAGAGCCTATGTCCTATGAAATCAaaccaaaaaagaaaaaaaagaaaaagaacaTAGAAGATCCTTTTAAAGACATTGAGGAAAAGGTTAAACTTCCCACTGTAACTGTATTTGATCCTACATCTGATTCTGCGTTAGATCCAGAAGTTTCTATTAAAGTTGAAAATATTGAAGTAGAGCTAGACTTCAATGATTTTGCAAATGATAATGGTCTTATGGTTGAAGGACCATATAGTGATGATGGACAGCCTGAAGCATTTGATAAACTTGgacaagaaaacaaaaaagggGATGTATTACGcacttttcaaaatattattaatgataaacCGCCTGTTGAAATACCAGATAACTCAGACATGGCTCCTAATTATGTTTGCAAGGTGTGCCATCTAGTCTTTCAATCAcctaaaactttaataatgcATCAGAGAAGAAAACATAAGGTATTCCGAAGGTCTTTCAAACACATATGTGATTACTGTAGTATGTCatatgaaacaaaaaatagtcTTGTTGCtcatattaaaagaaaacatggTCCAGATTCAACACAAGATGATGGAGAGGAAAGGACATGTGAAATTTGTGCATTAGTTTTCAAAGGCATGGGTAGATTACGCATGCATATGCGGAGAAAACATGGTTCTTTTAAAGAATCTTTTAAACATGTTTGCAAGGAGTGTGGTCTTACTTATGAAAAACATAGAAGTTTGATTGTACATATAAGAAGAAAGCATTCAGGAATCATTAAAGTGGAAGATCGATATTTCAATTGTCCATTTTGTCCAATGGTTTATAATAAACGTGAAACATATGCAAGACATGTACATAGAAAGCATAGAAGAAGTGATGATGATTCTAATCGTAaactaaataatgatattatgggaaacataaaaaatacagaaactGGTGAACTATGTTGCACTGAATGTCCATTAGTGTTTTCAACATTAACTTATTTGAAGTTGCATATGCGAAGAAAGCACAATGCTATGAAAGAAGATTTTCGTCTGAAATGTAAAATATGCAATTTATCCTATGATAAAATTGAGAGTCTGAAAAGACATGTGCGTAGAAAACATGACAAGGTGACATATTGTGATATCTGTAGAAGACAATTTGACACACATGAGGCTTACTTAGGCCACACGCATGCTAAGATTGCAAGAGAGTGTCCGGTTTGTGGCCTTATTTTTGCATCGCAAAGTGGATTAGGCAAACATCTACGTTGTGCACATGAAATTGCTAAGCCGAAGACAGTTATTTGTCACCTTTGTAATGCAGCTTTTCATACCAAGAGACAATTGAAACCTCACTTTTTACGAGTACATTTAAAAGTATCCTATACATGTCAATTCTGTAAAAAAGTGTTAAAGTCAAAAGAAACTTATACACGACATATACTTATGAAGCATCATAACGATAAACCCTCTAGTGATTTACAAATATGTGAACATTGTGCTGCTACATTTTCAAATGAATTGGAACTTAGACGACATTGTACTGAAGTACATAACacaaatgaaataaatgattcagatgatgttgtattaaaaaacGAATTAGAAACCGATATTGCTAAGGTATCAAGtgatattgttataaaaaaagaagaagtTGATATACCAACAAAATATCAGTGTACAAAATGCCCAGAATGTTATCCCAATTgggatcaattaaaattgcattaTGAACAAAATCATTATGTGGCTAAGGAAACACAATGTCAACTTTGTGGGGAATTGGTGCCAGATAATGAATTAGCAAAGCACATCAAATCACATAATGATACAACAGTACAATGCAGGTATTGCAATTTCTCTTCAATCAATAGGGCAAGTATGACCCAACATTTGCTGAGACACAAAAATGCAACAACGATTAATTGTAGCTTTGAAAACtgcaaatataaaactttttatgaaGATGCAATGGAGAAACATAAGAGAAAACATATTGATCAAGGTGTAAAACTTCAATGTACACAGTGCCCTTTTCAAAcgatgaataaatatattttaaagtatcaTGAAGAAGCACACGTAACTGGAAAGAAACGTTATGCATGTGATCAATGTGATTATGCTACCATACTACCAGCGGCATTAGttcaacataaatataaacattccACAGAAAAGAGATTTAAGTGTGAGGTGTGCCCATTTGCTACCAAGTACAATACGTCACTTCGTTTTCACGTTAAAAAGAAGCACTGTGATCTTCCTTCATGA
- Protein Sequence
- MSKIEESTVDFKKKGKNYERKDPTSFLPEEPMSYEIKPKKKKKKKNIEDPFKDIEEKVKLPTVTVFDPTSDSALDPEVSIKVENIEVELDFNDFANDNGLMVEGPYSDDGQPEAFDKLGQENKKGDVLRTFQNIINDKPPVEIPDNSDMAPNYVCKVCHLVFQSPKTLIMHQRRKHKVFRRSFKHICDYCSMSYETKNSLVAHIKRKHGPDSTQDDGEERTCEICALVFKGMGRLRMHMRRKHGSFKESFKHVCKECGLTYEKHRSLIVHIRRKHSGIIKVEDRYFNCPFCPMVYNKRETYARHVHRKHRRSDDDSNRKLNNDIMGNIKNTETGELCCTECPLVFSTLTYLKLHMRRKHNAMKEDFRLKCKICNLSYDKIESLKRHVRRKHDKVTYCDICRRQFDTHEAYLGHTHAKIARECPVCGLIFASQSGLGKHLRCAHEIAKPKTVICHLCNAAFHTKRQLKPHFLRVHLKVSYTCQFCKKVLKSKETYTRHILMKHHNDKPSSDLQICEHCAATFSNELELRRHCTEVHNTNEINDSDDVVLKNELETDIAKVSSDIVIKKEEVDIPTKYQCTKCPECYPNWDQLKLHYEQNHYVAKETQCQLCGELVPDNELAKHIKSHNDTTVQCRYCNFSSINRASMTQHLLRHKNATTINCSFENCKYKTFYEDAMEKHKRKHIDQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYACDQCDYATILPAALVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879060;
- 90% Identity
- iTF_01205957;
- 80% Identity
- -