Pmel010071.2
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- -
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000046.1:1809857-1818416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0046 0.46 11.8 1.0 3 23 745 766 744 766 0.96 2 23 0.042 4.2 8.7 0.6 1 22 1134 1155 1134 1155 0.95 3 23 2.4 2.4e+02 3.2 0.1 1 23 1196 1219 1196 1219 0.86 4 23 0.028 2.8 9.3 0.3 3 21 1230 1248 1228 1249 0.94 5 23 4.6 4.6e+02 2.3 0.0 3 20 1258 1275 1256 1279 0.88 6 23 0.0044 0.44 11.8 2.3 3 23 1299 1320 1297 1320 0.94 7 23 0.1 10 7.5 4.3 1 23 1326 1349 1326 1349 0.96 8 23 0.12 12 7.3 0.0 1 23 1375 1398 1375 1398 0.90 9 23 0.037 3.7 8.9 3.3 1 23 1403 1425 1403 1425 0.96 10 23 0.003 0.3 12.3 0.3 1 23 1431 1454 1431 1454 0.95 11 23 0.00014 0.014 16.6 1.6 1 23 1467 1489 1467 1489 0.97 12 23 0.00017 0.017 16.3 1.8 1 23 1537 1560 1537 1560 0.97 13 23 0.0023 0.23 12.7 1.1 1 23 1621 1644 1621 1644 0.96 14 23 0.0016 0.16 13.2 1.4 2 23 1664 1686 1663 1686 0.95 15 23 0.033 3.3 9.1 0.2 2 23 1692 1714 1691 1714 0.95 16 23 0.0094 0.94 10.8 0.2 1 21 1759 1779 1759 1780 0.95 17 23 0.0029 0.29 12.4 0.3 1 23 1790 1812 1790 1812 0.93 18 23 0.00074 0.074 14.3 0.3 3 23 1906 1927 1905 1927 0.92 19 23 1.7e-07 1.7e-05 25.7 1.1 3 23 1934 1954 1933 1954 0.98 20 23 0.00077 0.077 14.2 0.0 3 23 1973 1994 1972 1994 0.96 21 23 0.18 18 6.8 0.0 1 23 2017 2039 2017 2039 0.97 22 23 0.011 1.1 10.5 0.4 1 23 2045 2068 2045 2068 0.95 23 23 0.00024 0.024 15.8 0.4 1 23 2076 2099 2076 2099 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTTAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATATTTTCTACCACCAGTTCGGATGACTCGGAACCTCTCGTCCTTGCTGTGAAAATTAATGAGTGCGTGTCCGTTCAGaTAAACGAAAATGACGAATTGCCAACTAATGTCTGCAGAAAGTGCATGGATAATGTCAATAACTGGCACACATTCAAGTCAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTAATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCAAATGAGGGATTATCTGATGGGGGTTATGATGATGGAGTGGTTATCAATGGATCTTATCCTGATGATGAAACAGCTGCATCCTCAAGCAAGATCCAACCTGAAGGCCCACCAATATTGGCATCTTTGGGACTCACTCCGAGAAGTGATAAGaAAAATATAGATCCTCGAATGGACTGGCAACGAGTTCAAGCTATACTGGATATTATAAGGGACGATGAAGTTATCGATTCTCTCCAGTCCACTGAGGAATGTGAATTTTCTCATATATCAGATCACGACTCTGACGTTGAAACAGAATTAAAGGATGAAGTTTCTGCTGCATGCAGCAATTCCAAAACTGGTTACATTTGTAAGAACAAAATTGTTCTATCAAAATTGCCAAAGTTATCTTTAGCCGAAAATATAGCAAAAGTAAAAGAAGTATCACAATTGAGAAAAcgaaacatacatacaaatggTGTCAAATGCTATCCTAGACCGAGAGATGCGTGGCAGATGCTCATCAGTGATGATTTGCTGGAACTAATTGCCACATCTACCAATGAAAATATGTCCAAGACCAACAATCATCCGACCACTATGAAAgaaatcaaaacttttattgGTATTCTCTATTACCAAGGCATTATGAGGACGACTCATGAAAAATGCAGTGACCTCTGGGACTATGACTTTGGACCGATATGCATCCAGAGAGCTATGAATTATCAGCGCTTTAAAGTTTTACTTGAAAACATCCGTTTTGATACTGAAGATGACTCTGGAATGATGCAATTGGACATAATGAAGCGCATAAGAAaagtatttgaaatatttgctatGAATTGTCGCACATCCATGGATATTGGGAATATTGCAGTCATAGACGAGACGCTTCTGCCGGTTTGGGGCCCTTGTCCTTTCAGATATAGTATAAAAAACAAGGAAATGAAAGAGGGCATGAAAGTTGTACTCGTtgtagacccaaaaaatttCTACATCAGCAATTTAGATGTCATCACAGACAGTTATTTCGGGAGTGAAGACATTGCCTTTAAATTGGTGCAGCACTTAGCGGGTAGCGGACGCATCATCATAATGGACAGTTGGTTCACATCTGTTAATTTAATCGATACTCTTAGGAAAGAATACAGCTTATTTAGCATTGCCGCACTGCATCCAAACGATGAAAACATTCCACCGATCTTCCTTTCTTCGGATAGAAAAAGCAAACCGTTCCTCAAAGGTTTCTTCGATAACGGCACGGTTCTGTCGTCCTTCGTGAGTGCAAATTCCAAAATTGGCAACATATTGAGTAATGAACCGAGTCACTATAAAAGATCACACACGACTCATTCGGCTGTGTccgaatataaaaaatacaagtcgACGGTGGAAGTGGTCGATGTCCTGATGCATTATTACACAACTATGCAGAACACTAATGATTGGACTTTATCCTTGTTTTTCATGCTTTTGAATATTGCATCGGTGAACGCTCAAGTATTGTGGAGTGTCAGCAATAATGGAAATGTATTGAACCGTCGATTATTTATTCGCAAATTGGCCTCGAGTCTACTGGAAACTATAAATGTAGGCCGCGACTCGAGCGAGTCGCTCGCTCTGAAGAGACCGAGGTTGAACCCTGTTGAAAATAGAGTGTCGTATAGTAAAAGGAGGAGATGTAGAATTTGTATCCAGACCTCAAAGAGGGACAGACGAACCACACAGGCCTGCTTTAAATGTGGCATATCTATTTGCAAAGAACATACAGTTTGCGGTGTCGAAAGCGATAAAGATGAAGAGGAAATGGAAGACGAGGAGATGAACGAGGATCAGGCCTTCAACGCCCCTAATGTACCCGAAGTGTCCATCACCGTGATGCGTCCTTCGGGCGAGACTTTACACTCGCGTCAAGGAATACAACAACTGGCGTCTAAAGACTGTCTCGTGTGCGGCCGCTCTTATAGATATTCTCACAATGCCAGGAGACACGAACTGACAGCTCACAGCTTCGATAgatatacaaacaaaataacgCCTAAAAAATCACACAACCGGATGCAACCTAAATTGCGACCCAACCCGTTTAACCCTAAAGCCCGGTTGATGCCGAATCCCATCAGCCATAAGATGCAACTCCAGCTGCCCCAACTACAACAATCTATCAAACTTATGCCTAAGAAAATAATTCCACCAAAACCGATTCCCATCAGAAGCCTCAAGCCTTCGCAGAACCATTTGCCTTATCCCTTGCGTATCAAGGCGCTTAAAGATTTGCAAATTAAAAAGAAGGAACCGCAAATATTGAAAACGCTACTTACGACCAAACCGGAGGTTCTGGTATCGGAGCCAGAAATTATTAACTCGGGGCCCGAAAGCCCCGAAACGTTGATATCCGAACCGGAGATTGCCTCATTCCAAGTCGAAACTATCTTGTCCGAGCCCGATGGCTTCATCCACCAAGACGACGCCGATAAAGATGAAGACGTCCAAAATCATAACCAGAATTACGACACGGTCGATATGGATTCAGAAAATGAAATTGAAATCGCGCGTCAACCCGATAATGAGGAAGAAACTAGAGTTAAGCCCGAGAACGAAGCGGAAGACGAGGAAGAAAATGCTGGAGACGAACAACAGAACGATTTAGGAAAAGAAAATGAAGGTATAGACGAAAGTCGGGAGAAAGTATCCGAAGAACTTCACGAGGATGGCGAAGAAGATGCAAAAGAAACCGAAGAAACGGACAAAGACGTCGATGACAGTCAAGAAAATTACGAATACGACCAAGACGGTGACCCTCCGATAGCCCCTGTCGTGGAAATAAACGAGGATATGCAAAATTCCTACAACAGCGAAGCAATTGAAAACGAAGAAGAGGAATTGGAAGATTACACCGCGGACGACGGTGGAGATGGAGAAGAAGAGGCCAAAGAGCTGGATCCGGACAAACAATACGTTACTAAGACGCAAAGAGAATTCATTCTCAAGTATCGGGACATAATCGAACAAATCAATACCCAGAGGTGTCTCTGCTGCGATAGAGCACATCCCCGAAGAAAAGCGGTCATCCAGCATTTGCAAAAAAACGGGCACAAAGTCCCCAAGCACACGTGCTACAATTGCGTCGTTACATTTTCTCATATCGGCGCTCTGCTGAGCCACATGCGGTCGAACTCGTGCACCGATTTGTGGAAAATCATCTACAAGGAAGGCGGCGTCACCGACGATCAAGTGATCGACGACGAGCCAAAGGTTAAAGTGCAATACAAAGACATTCTCAACGCGAGGTCTTACGCCTGCAAGCTGTGTCCCGCTAAGTTCCAAttgaaacaattaataatgaagCACGTGCTCGACGTGCACGAGGATGGCCAATCGCACGTCGTTCTCGCGTGCGTACATTGCGGCGCACGATTCAAAGATAAATCTATTTGGAAGAAGCACATCCGCAACGGGGAATGCACCGTGTACATCGCGTGCGATCTGTGCACCGAGAAGTTTGGCAACGTGCAGGACTTTAACGAGCACGCCGTGGCCGTCCACGCCGGCAATTTCGATCCCGACAGTCAGAGCAAGTGCATCGACGGACGACCGACGGATTGCCCGATATGTGATAAGAAATGCTGCTCTTATCAGGCTCTCGTGAAACATTTGAAAGCTATTCACAACGAAGAGACCCCCCACTACTGCCAACACTGCGAGGCGAAGTTCGAACACGCCGCCGATCTCGACAAGCATACCTACACGGATCACTCTCTCAAGATGCTGGGAACTCATGCGTCCGAGCCGGACATGTCGCTGGTGAAAGAAGAGGCCGAGGAGTACCATTACTCGTGCACCGAATGTAACGCCATATTCGAGACGGTCGACGCGTGGACCGACCACCAGGTCGCCGAACACAACCAGGTCGCGCATCACTGCGACCAATGTGAGAAGAAATTCTTGCGGCCCTCCGAACTGGCCGAGCACAAAAACAGCCACTTGCGTGTCAAATTTTATCCGTGCAGTCTTTGCGGAAACTCTTACAGTAGTCCTCAGAAGCTGTCTCAACACGTCCAACAGACTCATCCCGGATCGAGCACCATAGGCGCGGGAGACACAGATTTCTTCTGCGATATTTGTGTCAGAACATTCAAAAGCCGCCAGGCTTTCTCGAACCATATGCGTATTCACGCCAAAGTACCATCCAACAAGAAAAGGCCGGGCGATTCGAGGAGTTTCGCTCCGCAGATTATCGGAAAACCGATACACTTTTCGATGATCCAACCGGGATTCAGTCCGTTCAAACCGAACTGTAACGTGCCCAACGCTCCCTATTCTTGTGATATATGCGGCAAAGGGTTTAtgcataagaaaaatatttggaaGCATAAGAAGGTGTTGCACGCGGACCTTTTGAACGACAGACACAACGACAGCGAGGAGAACACCATGCACGCCTCCACGGAGGAGGACGAATACAACCCCGACGAAAATGGGGCCATTCTGTCGACACCTCAGTTTAACAGTTTCAACTTCGCCAACATGACTAACTCCATGCAATCGACGCCCCAAGAACCCATGCAGTTCTCGTGCGAATTGTGTTACAAACGCTTTCCGCTCAAGGCCAGCCTGTGGAAGCACAAACGCGCCAAGCACGGCATCATCAACCCTTCCGCTACCGACACTTCGGTCGAGGTCAACAACAGTCGCTCCAGTTGTACCATTTGCAAAATATCTTTCGCCGACAAGAAGTCCTATTATCGACACAGGAAGAACGTCCACAAGTCGACGGTTCAAATGTGTAAGATATGCGGAAAGCCATTGAACTCGACGTTGGAGCTGTACGAACACTTGAAATCCGATCACGCGCGAGAACTGTTGGGCTACAACTCCTCTCAAGGCCCCGGAAAGTCTCAGGAGATGACTCAGGAGGTGGAAGTGGAGTTCGAGGATCGAGAGACCGAGCGCCCCGACCCCAGCGCCGAGTACCAAGCCCGCTATCCGTGCGACACCTGCGGGAAGCAATTCGTGGGGTTGCTGGCGTTGCAGAACCACCAGTGCATCAATCAGCTGCCCCAGCAGCCGCAAACTTTTGACTGTGAAATATGCCACAAGAGCTACGTCTCGATCGCCGCGCTGAAGAGCCACCGCGGGTGGCATCTGCGCTCCCCGGACGGAAAGGCGGCCGCGAACAACTCGGGCCTTTGGATGCCCCAGAACAAAGTGACCAGCAAAGTCAGCAAATACGAAGTCGTCGACGCCTCTCAGCTGGCCCGCGTCTCCCACACCACGACGTCGGCCCCCTCCCCCCTGACCAAGCGCAGGCTGCCTCCGGAGGTCGAGGTGACGGTCGTCAACCCGAATAAGAAGTTGCGATCCGACGACTCCGGAGAGATGGACCAGTCGACGAACGCGTCCGGGCCTTCGGACGACAGATACTGTAGGATATGCGACCGAGAGTTCACCAAGCGGGCGGCCTACCAGCGCCACATGGACGAGGTGCACCAACCGAACTCGGTGTTCTGCCCCGTCTGCGACAAGAGCTTCACGCGCAAGAGCACTCTCATAGTGCACATGAAGAAGCACTACGACGCCGGGGAGGGCGGCTCGGCCAACCTGCAGGACGAGGAGGGCTCGGCCTGCGAGGTCTGCGGGGAGCGCTTCGACGACCTCGACGCCCTCAACGCGCACCGCGACACGCAGCACGGCGACGAAGAGTCGGCCGGAGACTCGGAGGACGACGGCTCCGCTCCGCCGGCGCAGCCCGGCGAGTTCACGTGCGCCCAGTGCGGGGACGGGGTGGCCACGCCCCGCGACCTCATCGCCCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGAGGGCCATCGATCTGTCTTCGCACACGCGGGCGAGGCACTCGGACAACGAGAAGGTGTTCTTTCCGTGCGCCATGTGCGACCGATTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFSTTSSDDSEPLVLAVKINECVSVQINENDELPTNVCRKCMDNVNNWHTFKSVCERTQNKLQSLINKESSHLEEIHIKTEPNEGLSDGGYDDGVVINGSYPDDETAASSSKIQPEGPPILASLGLTPRSDKKNIDPRMDWQRVQAILDIIRDDEVIDSLQSTEECEFSHISDHDSDVETELKDEVSAACSNSKTGYICKNKIVLSKLPKLSLAENIAKVKEVSQLRKRNIHTNGVKCYPRPRDAWQMLISDDLLELIATSTNENMSKTNNHPTTMKEIKTFIGILYYQGIMRTTHEKCSDLWDYDFGPICIQRAMNYQRFKVLLENIRFDTEDDSGMMQLDIMKRIRKVFEIFAMNCRTSMDIGNIAVIDETLLPVWGPCPFRYSIKNKEMKEGMKVVLVVDPKNFYISNLDVITDSYFGSEDIAFKLVQHLAGSGRIIIMDSWFTSVNLIDTLRKEYSLFSIAALHPNDENIPPIFLSSDRKSKPFLKGFFDNGTVLSSFVSANSKIGNILSNEPSHYKRSHTTHSAVSEYKKYKSTVEVVDVLMHYYTTMQNTNDWTLSLFFMLLNIASVNAQVLWSVSNNGNVLNRRLFIRKLASSLLETINVGRDSSESLALKRPRLNPVENRVSYSKRRRCRICIQTSKRDRRTTQACFKCGISICKEHTVCGVESDKDEEEMEDEEMNEDQAFNAPNVPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKSHNRMQPKLRPNPFNPKARLMPNPISHKMQLQLPQLQQSIKLMPKKIIPPKPIPIRSLKPSQNHLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFIHQDDADKDEDVQNHNQNYDTVDMDSENEIEIARQPDNEEETRVKPENEAEDEEENAGDEQQNDLGKENEGIDESREKVSEELHEDGEEDAKETEETDKDVDDSQENYEYDQDGDPPIAPVVEINEDMQNSYNSEAIENEEEELEDYTADDGGDGEEEAKELDPDKQYVTKTQREFILKYRDIIEQINTQRCLCCDRAHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYKEGGVTDDQVIDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVVLACVHCGARFKDKSIWKKHIRNGECTVYIACDLCTEKFGNVQDFNEHAVAVHAGNFDPDSQSKCIDGRPTDCPICDKKCCSYQALVKHLKAIHNEETPHYCQHCEAKFEHAADLDKHTYTDHSLKMLGTHASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCGNSYSSPQKLSQHVQQTHPGSSTIGAGDTDFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRPGDSRSFAPQIIGKPIHFSMIQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHNDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANMTNSMQSTPQEPMQFSCELCYKRFPLKASLWKHKRAKHGIINPSATDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKSQEMTQEVEVEFEDRETERPDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYVSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSAPSPLTKRRLPPEVEVTVVNPNKKLRSDDSGEMDQSTNASGPSDDRYCRICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGSANLQDEEGSACEVCGERFDDLDALNAHRDTQHGDEESAGDSEDDGSAPPAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203431; iTF_00879018;
- 90% Identity
- iTF_01203431;
- 80% Identity
- -