Lari003373.2
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637264.1:324316-332181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0046 0.29 11.8 1.0 3 23 737 758 736 758 0.96 2 22 0.042 2.6 8.7 0.6 1 22 1123 1144 1123 1144 0.95 3 22 2.5 1.5e+02 3.2 0.1 1 23 1185 1208 1185 1208 0.86 4 22 0.081 5.1 7.8 0.5 3 21 1219 1237 1217 1238 0.94 5 22 0.0052 0.33 11.6 0.8 3 23 1288 1309 1286 1309 0.94 6 22 0.039 2.4 8.9 2.4 1 23 1315 1338 1315 1338 0.91 7 22 0.12 7.5 7.3 0.0 1 23 1364 1387 1364 1387 0.90 8 22 0.037 2.3 8.9 3.3 1 23 1392 1414 1392 1414 0.96 9 22 0.0056 0.35 11.5 0.2 1 23 1420 1443 1420 1443 0.95 10 22 0.00014 0.0086 16.6 1.6 1 23 1456 1478 1456 1478 0.97 11 22 0.00017 0.011 16.3 1.8 1 23 1527 1550 1527 1550 0.97 12 22 0.0037 0.23 12.1 1.8 1 23 1611 1634 1611 1634 0.96 13 22 0.0017 0.1 13.2 1.4 2 23 1654 1676 1653 1676 0.95 14 22 0.033 2.1 9.1 0.2 2 23 1682 1704 1681 1704 0.95 15 22 0.0095 0.59 10.8 0.2 1 21 1749 1769 1749 1770 0.95 16 22 0.0029 0.18 12.4 0.3 1 23 1780 1802 1780 1802 0.93 17 22 0.0002 0.013 16.0 0.4 2 23 1892 1914 1892 1914 0.93 18 22 1.7e-07 1.1e-05 25.7 1.1 3 23 1921 1941 1920 1941 0.98 19 22 0.029 1.8 9.2 0.0 3 23 1960 1981 1959 1981 0.92 20 22 0.18 11 6.7 0.0 1 23 2004 2026 2004 2026 0.97 21 22 0.021 1.3 9.7 0.3 1 23 2032 2055 2032 2055 0.93 22 22 0.00024 0.015 15.8 0.4 1 23 2063 2086 2063 2086 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTAtgatcgtgtttgtagactgTGCTTGTCATCTCGAGGTGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACACGGAACCTCTTGTCCTCGCtttgaaaattaaagattGCGTGTCTGTTCAGATAAACGAAAATGACGAACTGCCAACTAATGTCTGCAACAAATGCATGGATAATGTCAATAACTGGCACACATTCAAGTCAGTCTGTGAAAGGACACAAAACAAACTACAATCTCTGATTAATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAGCCCAGTGACAGATTGTCTGATGGGGGCTATGATGATGGAGTGGTTATCAATGGATCATATCATGAAGATGAGATTGCTGGTAACTTGAGCAAAATTCAACCAGAAGGTCCACCGATATTGGCATCCTTGGGCCTCACTCCGCGAAGTGATAAGAAAAATATAGATCCTCGAATGGACTGGCAACGAGTCCAGGCCATACTGGACATAATAAGGGATGATGAAGTCATAGATTCCCTCCAGTCCAATGAGGAATGTGAAGTATTTCACATATCGGATCATGACTCTGAAGTTGAAACCGAATTGAAGACAGAGGTTCCGATCGATTGCAGAGAATGCAATACCGGTTACATGTGCAGGAACAAAACTGTTTTATCTAAAATGCCAAAGTCAACATCAACagaaaatttggtaaaaatcaaAGAAGTGTCCCAAATGAGAAAACAGAAGATTCCCCATACCAAACCCACATGCAGGCCGAGAGATGCCTGGCAAATGCTCATCAGTGATGACTTGTTGGAACTGATTGCCACTTCTACCAATGAAAGAATTTTAAAGTCTAAGAACTGCCTGACCACTAAGAAAGAAATCAAAACGGTGATCGGTATACTTTACTATCATGGCATTATGAGACCCACCCATCAGAAATGCATTGATCTGTGGGACCACAATGTTGGGCCTCTGTGTGTACAAAGAGCGATGAAACATCAACGCTTTCAGTTTTTACTCGAGAACATGTGTTTTGACACAGAATATGACTCCGGGATCATGCATTTGGATATCATGAAGCGGATGAGAAAAGTGTTTGAGATATTCGCAATGAACTGTCGGACATCTGGTGACATTGGGAGCACTGCAGTCATCGATGAGATAGTGTTGCCTGTTCAAGGTCCTTGTCCATTTGGATATAGtataaaaagcaaaaatataaaaaagggcATGAAAGTGGTGCTCGTTGTGGATCCAAAAAGTTTCTACATAAGCAATCTGGACGTCATCACCGACACTTACTTCGGCAGCGGAGACATTGCCGTTAAACTGCTTCAGCACTTGGCGGGAAGCGGACGGGTCATCATCATGGACAGTTGGTTCACGTCTGTCAATTTAATCGAAACCCTCCGGAGAGAGCACGGCCTCTTCAGCATCGGGGCCCTGCACCCGAAAGACGAAAACATTCCGCCGCTCTTCCTCTCACCTAACAGAGACAGCGGGTTCATCAAAGGTTTCCTGGACAAGAACACGGTCCTGTCCTCCTTCGTCAGCTCCGATTCCAAGGTGTTGAATATCCTGAGCAATGAGCCTCACCACCACGAGCGGTCGCACGCCGCTCACGCGGTTGTGTCCGAGTATCAAAAGTACAAGTCGTCGGTGGAGGTGCTGGATGTCCTGATGCACTATTACACCACGGCGCAGAACACGAACGGCTGGACTCTATCGTTGTTCTTCATGCTGTTGAACGTGGCTTCGGTGAATGCCCAGGTGCTGTGGAGCAGCAGCGGCAGGACCGTGCTGCAGCGGAGGCTGTTCATCCGGGAGTTGGCCTTGAGCTTGATGGAGACGGTGGATGCGGACTTGACAGAGTCCGTTGTGAAGAGGCCGAGGTTGGGGTCGGTGGAACGGTTGGGGTCCCACAATAAAAGGGGGCGATGTCGGATCTGCGCCCAGACCTCAAAGCGGGACAGGCGGACCATGCAGAAGTGCTCCAAGTGCGGCATCTTTATTTGTAAAGAGCACACGGGCCTGGAGAGTGACAAAGATGAAGAGGAAATGGAAGAAGAGGAGATGAACGAGGACGAAGCGGCTTTCAACATTCCGAATGTCCCCGAAGTGTCTATCACCGTGATGCGGCCTTCGGGCGAGACGCTGCACTCGCGCCAGGGCATCCAGCAGCTGGCGTCCAAGGACTGCCTCGTGTGCGGCCGCTCTTACCGATACTCGCACAACGCCCGGCGACACGAGCTCACGGCCCACAGCTTCGACAGGTACACCAACAAGATTACGCCCAAGAAATCGCACAACCGGATGCAGCCCAAACTGCGGCCCAACCCCTTCAACCCCAAGGCTCGGCTGATGCCGAACCCCATAAGCCACAAGATGCAGCTCAAACTGCCCCAGCAGTCCATCAAACTAGTGCCGCAAAAACTTGTGCCCCCGAAGCCGATTCCCATCAGAAGCCTGAAGCCCTCGCAGAATAACTTGCCTTATCCGCTGCGAATCAAGGCCCTCAAGGATTTGCAGATCAAGAAGAAGGAGCCGCAGATATTGAAAACATTGCTGACCACCAAACCGGAGGTGCTCGTGTCGGAGCCGGAGATCGCGAACTCGGGGCCCGAAAGCCCCGAGACATTGATATCGGAGCCGGAGATCGCCTCCTTCCAGGTCGAGACCATTCTGTCGGAGCCCGATTTTATTAATCACGATGACGCAGACAAAGACGACGACGTGCAGAACCAGAACTACGACACCGTCGACATGGATTCGGAGAACGAAATCGAAATCGCGCGGCAACCGGAAGCGGAGGACGACCGTGAAGCTCACCCGGAGAACGATGTGGAGGAGAACGAGCATGACGACGAACCGGCGGGAGAAGAACAGCAGATCGATATGGGAAAGGAAAACGAAGGCGGAGATGACAGTCGAGAGAAAGGATCCGAGCGGCAGCCCGATGACGGGGAAGAGGATGCAAAGGAAGCCGAAGAAGGGGCCGACAAAGACGTCGAGGACGGTCAGGAAAATGACGAATATGACCAAGACGGTGAGCCTCCGATTGTGCCCGTCGTGGAAATAAACGAGGATATGCAAAATTCGTACAACAGCGAAGCCAACGATAACGAAGAGGAGGAATTGGAACTGGACTACACCGGAGAAGATGGAGAAGAAGACTGCAAAGAGCTGGACGCGGACAAGCAGTACGTGACGAAAACGCAAAGGGAGTTCATCCTCAAGTATCGGGACATCATCGAGCAGATCAACACGCAGCGCTGCCTGTGCTGCGACCGAGAGCATCCGAGGCGCAAGGCCGTCATCCAGCACCTGCAGAAGAACGGGCACAAGGTGCCGAAGCACACGTGCTACAACTGCGTCGTCACCTTCTCGCACATCGGGGCGCTGCTGAGCCACATGCGCTCCAACTCGTGCACCGACCTGTGGAAGGTCATCTACAAGGAGGGCGGCATCACCGACGACCAGGTGGTCGACGACGAGCCCAAGGTCAAGGTGCAGTACAAGGACATCCTCAACGCCAGGTCCTACGCCTGCAAGCTGTGCCCCGCCAAGTTCCAGCTGAAGCAGCTGATCATGAAGCACGTGCTGGACGTGCACGAGGACGGCCAGTCGCACGTGCCGCTGGCGTGCGTGCACTGCGGCTCGCGCTTCAAGGACAAGTCCATCTGGAAGAAGCACATCCGCAACGGAGAGTGCACGGTGTACATCGCGTGCGACCTGTGCGCCGACAAGTTCGGCAGCGTACAGGACTTCAACGAGCACGCCGTGGCCGTGCACGCGGGCAGCTTCGACCCCGACAGCCAGAGCAAGTGCGTGGACGGCCGCCCCACGGACTGCCCGCTCTGCGGCAAGAAGACCTGCTCGTACCAGGCGCTGGTCAAGCACTTGAAGGCCATCCACAACGAGGAGACGCCCCACCACTGCCGCCACTGCGACGCCAAGTTCGAGCAGGCCGCCGACCTGGACAAGCACATCTACGCGGAGCACTCGCTCAAGATGCTGGAGGCGCAGGCCTGCGAGCCGGAAATGTCCCTGGTCAAGGAGGAGGCCGAAGAGTACCACTACTCGTGCACTGAGTGCAACGCCATATTCGAGACGGTGGACGCGTGGACAGACCACCAGGTGGCCGAGCACAACCAGGTGGCGCACCACTGCGACCAATGCGAGAAGAAGTTCCTGCGGCCCTCCGAGCTGGCCGAGCACAAGAACAGCCACTTGCGCGTCAAGTTCTATCCCTGCGGTCTGTGCGGCAACTCCTACAGCAGCCCGCAGAAGCTGTCTCAGCACGTGCAGCAGACCCACCCCGGCTCCAGCACCGTCGGCGCCGGAGACGCCGACTTCTTCTGCGACATTTGCGTGCGCACCTTCAAGAGCCGCCAGGCCTTCTCCAACCACATGCGCATTCACGCCAAGGTTCCATCCAACAAGAAAAGGTCGGGCGACTCCAGGGGCTTCGCTCCGCAGATCATCGGTAAGCCGATTCAACACTTCTCCATGGTCCAGCCGGGATTCAGTCCCTTCAAGCCCAACTGCAACGTGCCCAACGCGCCCTACTCCTGCGACATCTGCGGGAAAGGCTTCATGCACAAGAAGAACATCTGGAAGCACAAGAAGGTGCTGCACGCCGACCTCCTCAACGACAGGCACGACAGCGAAGAGAACACCATGCACGCCTCCACCGAGGAGGACGAGTACAACCCCGACGAGAACGGGGCCGTGCTCTCCACGCCGCAGTTCAACAGCTTCAACTTCGCCAGCCTCGCCAACTCGGCGCCGCCGCCCCTCCAGGAGCAGCCGGCGCAGTTCTCCTGCGAGCTGTGCTACAAGCGCTTCCCGCTCAAGACCAGCCTCTGGAAGCACAAGCGCGCCAAGCACGGCATCATCAACCCTTCGGCCACCGACTCCTCGGTCGAGGTCAACAACGGCCGCTCCAGCTGCACCATCTGCAAGATTTCTTTCGCCGACAAGAAGTCCTACTACCGCCACCGGAAAAACGTGCACAAGTCGACGGTTCAGATGTGCAAGATCTGCGGGAAGCCGTTGAACTCCACGCTGGAGCTGTACGAGCACCTGAAGTCGGACCACGCGAGGGAGCTGCTGGGCTACAACTCCTCGCAGGGCCCCGGCAAGGCGCAGGAGATGACGCAGGAGGTGGAGGTGGAGTACGACGACAGAGACAGCGAGCGGCCGGACCCCAGCGCCGAGTACCAGGCGCGCTACCCCTGCGACACGTGCGGCAAGCAGTTCGTGGGCTTGCTGGCCTTGCAGAACCACCAGTGCATCAACCAGCTGCCGCAGCAGCCGCAGACTTTCGACTGCGAAATATGCCACAAGAGCTACGTGTCCATAGCCGCGCTGAAGAGCCACCGCGGCTGGCACCTGCGCTCGCCGGACGGCAAGGCGGCCGCCAACAACTCGGGCCTGTGGATGCCGCAGAACAAGGTGACCAGCAAGGTCAGCAAGTACGAGGTGGTGGACGCCTCGCAGCTGGCGCGCGTCTCCCTCGCGTCGGCCTCCTCGGGCGGCAAGCGCCGGCTGCCCCCCGAGGTGGAGGTGACGGTCGTCAACCCCAACAAGAAGCTGCGCTCCGACGACTCGCTGGAGATGGAGCAGGCCTCCAGCGCGTCGGGCCCGGCGGACGACCGCTACTGCAAGATATGCGACCGCGAGTTCACGAAGCGGGCGGCGTACCAGCGGCACATGGACGAGGTGCACCAGCCCAACTCGGTGTTCTGCCCCGTGTGCGACAAGAGCTTCACGCGCAAGAGCACCCTCATCGTGCACATGAAGAAGCACTACGACGCCGGCGAGGGCGGCCCCGCCCACCTGCCCGAGGAGGACAGCCCGGCCTGCGACGTGTGCGGCGAGCAGTTCGACGACCTCGAGCTGCTGAGCGCCCACCGCGAGGCGCAGCACGGCGACGACGAGTCGGGCGCCGACTCGGAGGACGAGGGCTCCGCGCCGCTGGCGCAGCCCGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCCCGCGACCTGATCGCGCACCGCGCCATGCACGCCACGCCCACCAAGTTCCTGTGCAACATCTGCAAGGTGTACTTCGCGCGGGCCATCGACCTGTCGTCGCACACGCGCGCGCGCCACTCCGACAACGAGAAGGTGTTCTTCCCGTGCGCCATGTGCGACCGCTTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDTEPLVLALKIKDCVSVQINENDELPTNVCNKCMDNVNNWHTFKSVCERTQNKLQSLINKESSHLEEIHIKTEPSDRLSDGGYDDGVVINGSYHEDEIAGNLSKIQPEGPPILASLGLTPRSDKKNIDPRMDWQRVQAILDIIRDDEVIDSLQSNEECEVFHISDHDSEVETELKTEVPIDCRECNTGYMCRNKTVLSKMPKSTSTENLVKIKEVSQMRKQKIPHTKPTCRPRDAWQMLISDDLLELIATSTNERILKSKNCLTTKKEIKTVIGILYYHGIMRPTHQKCIDLWDHNVGPLCVQRAMKHQRFQFLLENMCFDTEYDSGIMHLDIMKRMRKVFEIFAMNCRTSGDIGSTAVIDEIVLPVQGPCPFGYSIKSKNIKKGMKVVLVVDPKSFYISNLDVITDTYFGSGDIAVKLLQHLAGSGRVIIMDSWFTSVNLIETLRREHGLFSIGALHPKDENIPPLFLSPNRDSGFIKGFLDKNTVLSSFVSSDSKVLNILSNEPHHHERSHAAHAVVSEYQKYKSSVEVLDVLMHYYTTAQNTNGWTLSLFFMLLNVASVNAQVLWSSSGRTVLQRRLFIRELALSLMETVDADLTESVVKRPRLGSVERLGSHNKRGRCRICAQTSKRDRRTMQKCSKCGIFICKEHTGLESDKDEEEMEEEEMNEDEAAFNIPNVPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKSHNRMQPKLRPNPFNPKARLMPNPISHKMQLKLPQQSIKLVPQKLVPPKPIPIRSLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIANSGPESPETLISEPEIASFQVETILSEPDFINHDDADKDDDVQNQNYDTVDMDSENEIEIARQPEAEDDREAHPENDVEENEHDDEPAGEEQQIDMGKENEGGDDSREKGSERQPDDGEEDAKEAEEGADKDVEDGQENDEYDQDGEPPIVPVVEINEDMQNSYNSEANDNEEEELELDYTGEDGEEDCKELDADKQYVTKTQREFILKYRDIIEQINTQRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKVIYKEGGITDDQVVDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVPLACVHCGSRFKDKSIWKKHIRNGECTVYIACDLCADKFGSVQDFNEHAVAVHAGSFDPDSQSKCVDGRPTDCPLCGKKTCSYQALVKHLKAIHNEETPHHCRHCDAKFEQAADLDKHIYAEHSLKMLEAQACEPEMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCGLCGNSYSSPQKLSQHVQQTHPGSSTVGAGDADFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRSGDSRGFAPQIIGKPIQHFSMVQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHDSEENTMHASTEEDEYNPDENGAVLSTPQFNSFNFASLANSAPPPLQEQPAQFSCELCYKRFPLKTSLWKHKRAKHGIINPSATDSSVEVNNGRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKAQEMTQEVEVEYDDRDSERPDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYVSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSLASASSGGKRRLPPEVEVTVVNPNKKLRSDDSLEMEQASSASGPADDRYCKICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGPAHLPEEDSPACDVCGEQFDDLELLSAHREAQHGDDESGADSEDEGSAPLAQPGEFTCAQCGDGVATPRDLIAHRAMHATPTKFLCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205097;
- 90% Identity
- -
- 80% Identity
- -