Pmad002045.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000003.1:11262620-11271002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0041 0.25 11.8 1.0 3 23 743 764 742 764 0.96 2 23 0.038 2.3 8.7 0.6 1 22 1132 1153 1132 1153 0.95 3 23 2.2 1.4e+02 3.2 0.1 1 23 1194 1217 1194 1217 0.86 4 23 0.073 4.5 7.8 0.5 3 21 1228 1246 1226 1247 0.94 5 23 4.1 2.5e+02 2.3 0.0 3 20 1256 1273 1254 1277 0.88 6 23 0.004 0.25 11.8 2.3 3 23 1297 1318 1295 1318 0.94 7 23 0.091 5.6 7.5 4.3 1 23 1324 1347 1324 1347 0.96 8 23 0.11 6.6 7.3 0.0 1 23 1373 1396 1373 1396 0.90 9 23 0.033 2 8.9 3.3 1 23 1401 1423 1401 1423 0.96 10 23 0.0027 0.17 12.3 0.3 1 23 1429 1452 1429 1452 0.95 11 23 0.00012 0.0076 16.6 1.6 1 23 1465 1487 1465 1487 0.97 12 23 0.00015 0.0094 16.3 1.8 1 23 1535 1558 1535 1558 0.97 13 23 0.002 0.13 12.7 1.1 1 23 1619 1642 1619 1642 0.96 14 23 0.0015 0.091 13.2 1.4 2 23 1662 1684 1661 1684 0.95 15 23 0.03 1.8 9.1 0.2 2 23 1690 1712 1689 1712 0.95 16 23 0.0085 0.52 10.8 0.2 1 21 1757 1777 1757 1778 0.95 17 23 0.0026 0.16 12.4 0.3 1 23 1788 1810 1788 1810 0.93 18 23 0.00066 0.041 14.3 0.3 3 23 1904 1925 1903 1925 0.92 19 23 1.5e-07 9.4e-06 25.7 1.1 3 23 1932 1952 1931 1952 0.98 20 23 0.00048 0.029 14.7 0.0 3 23 1971 1992 1970 1992 0.97 21 23 0.16 9.7 6.8 0.0 1 23 2015 2037 2015 2037 0.97 22 23 0.01 0.63 10.5 0.4 1 23 2043 2066 2043 2066 0.95 23 23 0.00022 0.013 15.8 0.4 1 23 2074 2097 2074 2097 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTTAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATATTTTCTACCACCAGTTCGGATGACTCGGAACCTCTCGTCCTTGCTGTGAAAATTAATGAGTGCGTGTCCGTTCAGataaacaaaaatgacgAATTGCCAACTAATGTCTGCAGAAAGTGCATGGATAATGTCAATAACTGGCACACATTCAAGTCAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTAATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCAAATGAGGGATTATCTGATGGGGGTTATGATGATGGAGTGGTTATCAATGGATCTTATCCTGATGATGAAACAGCTGCATCCTCAAACAAGATCCAACCTGAAGGCCCACCAATATTGGCATCTTTGGGACTCACTCCGAGAAGTGATAAGaAAAATATAGATCCTCGAATGGACTGGCAACGAGTTCAAGCTATACTGGATATTATAAGGGACGATGAAGTTATCGATTCTCTCCAGTCCACTGAGGAATGtgaattttcttatatatcAGATCATGACTCTGACGTTGAAACAGAATTAAAGGATGAAGTTCCTGCTGCATGCAGCAATTCCAAAACTGGTTACATTTGTAAGAACAAAATTGTTCTATCAAAATTGCCAAAGTTATCTTTAGCCGAAAATAAAGCAAAAGTAAAAGAAGTATCACAATTGCGAAAAcgaaacatacatacaaatgGTGTCAAATGCTATCCTAGACCGAGAGATGCGTGGCAGATGCTCATCAGTGATGATTTGCTGGAACTAATTGCCACATCTACCAATGAAAATATGTCCAAGACGAACAATCATCCGACCACTATGAAAGAAATCAAAACTTTTATTGGTATTCTCTATTACCAAGGCATTATGAGGCCGACTCATGAAAAATGCAGTGACCTCTGGGACTATGACTTTGGACCGATATGCATCCAGAGAGCTATGAATTATCAGCGCTTTAAAGTTTTACTTGAAAACATCAGTTTTGATACAGAAGATGACTCTGGAATGATGCAATTGGACATAATGAAGCGcataagaaaagtatttgaaatatttgctATGAATTGTCGCACATCCATGGAGATTGGGAATATTGCAGTCATAGACGAGACGCTGCTGCCGGTTTGGGGCCCTTGTCCtttcagatatagtattaaaaacaaGGAAATGAAAGAGGGCATGAAAGTTGTACTCGTTGTAGACCCAAAAAATTTCTACATCAGCAATTTAGATGTCATCACAGACAGTTATTTCAGGAGTGAAGACATTGCCTTTAAATTGGTGCAGCACTTAGCGGGTAGCGGACGCATCATCATAATGGACAGTTGGTTCACATCTGTTAATTTAATCGATACTCTTAGGAAAGAATACAGCTTATTTAGCATTGCCGCACTGAATCCAAACGATGAAAACATTCCACCGATCTTCCTTTCTTCGGATAGAAAAAGCAAACCGTTCCTCAATGGTTTCTTCGATAACGGCACGGTTCTGTCGTCCTTTGTGAGTGCAAATTCCAAGATTGGCAACATATTGAGTAATGAACCAAGTCACTATAAACGATCACACACGACTCATTCGGCTGTGTccgaatataaaaaatacaagtcgACGGTGGAAGTGGTCGATGTCCTGATGCATTATTACACAACTATGCAGAACACCAATGATTGGACTTTATCCTTGTTTTTCATGCTTTTGAATATTGCATCGGTGAACGCTCAAGTATTGTGGAGTGTCAGCAATAATGGAAATGTGTTGAACCGTCGTTTATTTATTCGCAAATTGGCCTCGAGTCTACTGGAAACTCTAGATGTAGGCCACGACTTGAGCGAGTCGCTCGCTTTGAAGAGGCCGAGGTTGAACCCTGTTGAAAATAGAGTGTCGTATAATAATAGGAGGAGATGTAGAATTTGTATCCAGACCTCAAAGAGGGACAGACGAACCACACAGGCCTGCTTTAAATGTGGCATATCTATTTGCAAAGAACATACAGGTGTCGAAAGCGATAAAGATGAAGAGGAAATGGAAGACGAGGAGATGAACGAGGATCAGGCCTTCAACGCCCCTAATGTACCCGAAGTGTCCATCACCGTGATGCGTCCTTCGGGCGAGACCTTACACTCGCGTCAAGGAATACAACAACTGGCGTCTAAAGACTGTCTCGTGTGCGGCCGCTCTTATAGATATTCTCACAATGCCAGGCGACACGAACTGACAGCTCACAGCTTCGATAgatatacaaacaaaataacgCCTAAAAAATCACACAACCGGATGCATCCTAAATTGCGACCCAACCCGTTTAACCCTAAAGCCCGGTTGATGCCGAATCCCATCAGCCATAAGATGCAACTCCAGCTGCCCCAACTACAACAATCTATCAAACTTATGCCTAAGAAAATAATTCCACCAAAACCGATACCCATCAGAAGCCTCAAGCCTTCGCAGAACAATTTGCCTTATCCGTTGCGTATCAAGGCGCTTAAAGATTTGCAAATTAAAAAGAAGGAACCGCAAATATTGAAAACGCTACTTACGACCAAACCGGAGGTTCTGGTATCGGAGCCAGAAATTATTAACTCGGGGCCCGAAAGCCCCGAAACGTTGATATCCGAACCGGAGATTGCCTCATTCCAAGTCGAAACTATCTTATCCGAGCCCGATGGCTTCATCCACCAAGACGACGCCGATAAAGATGACGACGTCCAAAATCATAACCAGAATTACGATACGGTCGATATGGATTCAGAAAATGAAATTGAAATCGCGCGTCAACCCGATAATGAGGAAGAAACTGGAGTTAGGCCCGAGAACGAAGCGGAAGACGAGGAAGAAAATGCTGGAGACGAACATCAGAACGATTTAGGAAAAGAAAATGAAGGTATAGATGAAAGTCGGGAGAAAGTATCCGAAGAGCCTCACGAGGATGGCGAAGAAGATGCAAAAGAACCCGAAGAAACGGACAAAGACGTCGATGACAGTCAAGAAAATTACGAATACGACCAAGACGGTGACCCTCCGATAGCCCCTGTCGTGGAAATAAACGAGGATATGCAAAATTCGTACAACAGCGAAGCAATTGAAAACGAAGAAGAGGAATTGGAAGATTACACCGCGGACGACGGTGGAGATGGAGAAGAAGAGGCCAAAGAGCTGGATCCGGACAAACAATACGTTACTAAGACGCAAAGAGAATTCATTCTCAAGTATCGGGACATAATCGAACAAATCAATACCCAGAGGTGTCTCTGCTGCGATAGAGAACATCCCCGAAGAAAAGCGGTCATCCAGCATTTGCAAAAAAACGGGCACAAAGTCCCCAAGCACACGTGCTACAATTGCGTCGTTACATTTTCTCATATCGGCGCTCTGCTGAGCCACATGCGGTCGAACTCGTGCACCGATTTGTGGAAAATCATCTACAAGGAAGGCGGCGTCACCGACGATCAAGTGATCGACGACGAGCCAAAGGTTAAAGTGCAATACAAAGACATTCTCAACGCGAGGTCTTACGCCTGCAAGCTGTGTCCCGCTAAGTTCCAATTGAAACAATTGATAATGAAGCACGTGCTCGACGTGCACGAGGATGGCCAATCGCACGTTGTTCTCGCGTGCGTACATTGCGGCTCACGATTCAAAGATAAATCTATTTGGAAGAAGCACATCCGCAACGGCGAATGCACCGTGTACATCGCGTGCGATCTGTGCACCGAGAAGTTTGGCAACGTGCAGGACTTTAACGAGCACGCCGTGGCCGTCCACGCCGGCAATTTCGATCCCGACAGTCAGAGCAAGTGCATCGACGGACGACCGACGGATTGCCCGATATGTGATAAGAAATGCTGCTCTTATCAGGCTCTCGTGAAACATTTGAAAGCTATTCACAACGAAGAGACCCCCCACTACTGCCAACACTGCGAGGCAAAGTTCGAACACGCCGCCGATCTCGACAAGCATACCTACACGGATCACTCTCTCAAGATGCTGGGAACTCATGCTTCCGAGCCGGACATGTCGCTGGTGAAAGAAGAGGCCGAGGAGTACCATTACTCGTGCACCGAATGTAACGCCATATTCGAGACGGTCGACGCGTGGACCGACCACCAGGTCGCCGAACACAACCAGGTCGCGCATCACTGCGACCAATGTGAGAAGAAATTCTTGCGGCCCTCCGAACTGGCCGAGCACAAAAACAGCCACTTGCGTGTCAAATTCTATCCGTGCAGTTTGTGCGGAAACTCTTACAGTAGTCCTCAGAAGCTGTCTCAACACGTCCAACAGACTCATCCCGGATCGAGCACTATTGGCGCGGGAGACACAGATTTCTTCTGCGATATTTGTGTCAGAACATTCAAAAGCCGCCAGGCTTTCTCGAACCATATGCGTATTCACGCCAAAGTACCATCCAACAAGAAAAGGCCGGGCGATTCGAGGAGTTTCGCTCCGCAGATTATCGGAAAACCGATACACTTTTCGATGATCCAACCGGGATTCAGTCCGTTCAAACCGAACTGTAACGTGCCCAACGCTCCCTATTCTTGTGATATATGCGGCAAAGGGTTTATgcataagaaaaatatttggaaGCATAAGAAGGTGTTGCACGCGGACCTTTTGAACGACAGACACAACGACAGTGAGGAGAACACCATGCACGCCTCCACGGAGGAGGACGAATACAACCCCGACGAAAATGGGGCTATTCTGTCGACACCTCAGTTTAACAGTTTCAACTTCGCCAACATGACCAACTCCATGCAATCGACGCCCCAAGAATCCATGCAGTTCTCGTGCGAATTGTGTTACAAACGCTTTCCGCTCAAGGCCAGCCTGTGGAAGCACAAACGCGCCAAGCACGGCATCATCAACCCTTCCGCTACCGACACTTCGGTCGAGGTCAACAACAGTCGCTCCAGTTGTACCATTTGCAAAATATCTTTCGCCGACAAGAAGTCCTATTATCGACACAGGAAGAACGTCCACAAGTCGACGGTTCAAATGTGTAAGATATGCGGGAAGCCATTAAACTCGACGCTGGAGCTGTACGAACACTTAAAATCCGATCACGCGCGAGAACTGTTAGGCTACAACTCCTCTCAAGGCCCCGGAAAGTCTCAGGAGATGACTCAGGAGGTGGAAGTGGAGTTCGAGGAGCGAGAGACCGAGCGCCCCGACCCCAACGCCGAGTACCAAGCCCGCTATCCGTGCGACACCTGCGGGAAGCAATTCGTGGGGTTGCTGGCGTTGCAGAACCACCAGTGCATCAATCAGCTGCCCCAGCAGCCGCAAACTTTTGACTGTGAAATATGCCACAAGAGCTACGTCTCGATCGCCGCGCTGAAGAGCCACCGCGGGTGGCATCTTCGCTCCCCGGACGGAAAGGCGGCCGCGAACAACTCGGGCCTTTGGATGCCCCAGAACAAAGTGACCAGCAAAGTCAGCAAATACGAAGTCGTCGACGCCTCTCAGCTGGCCCGCGTCTCCCACACCACGACGTCGGCCCCCTCCCCCTTGACCAAGCGCAGGCTGCCTCCGGAGGTCGAGGTGACTGTCGTCAACCCGAATAAGAAGTTGCGATCCGACGACTCCGGAGAGATGGACCAGTCGACGAACGCGTCCGGGCCTTCGGACGACAGATACTGTAGGATATGCGACCGAGAGTTCACCAAGCGGGCGGCCTACCAGCGCCACATGGACGAGGTGCACCAACCGAACTCGGTGTTCTGCCCCGTCTGCGACAAGAGCTTCACGCGCAAGAGCACTCTCATAGTGCACATGAAGAAGCACTACGACGCCGGGGAGGGCGGCTCGGCCAACCTGCAGGACGAGGAGGGCTCGGCCTGCGAGGTCTGCGGGGAGCGCTTCGACGACCTCGACGCCCTGAACGCGCACCGCGAAACGCAGCACGGCGACGAAGAGTCGGCCGGAGACTCGGAGGACGACGGCTCCGCTCCGCCGGCGCAGCCCGGCGAGTTCACGTGCGCTCAGTGCGGGGACGGGGTGGCCACGCCCCGCGACCTCATCGCCCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGAGGGCCATCGATCTGTCTTCGCACACGCGGGCGAGGCACTCGGACAACGAGAAGGTGTTCTTTCCGTGCGCCATGTGCGACCGATTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFSTTSSDDSEPLVLAVKINECVSVQINKNDELPTNVCRKCMDNVNNWHTFKSVCERTQNKLQSLINKESSHLEEIHIKTEPNEGLSDGGYDDGVVINGSYPDDETAASSNKIQPEGPPILASLGLTPRSDKKNIDPRMDWQRVQAILDIIRDDEVIDSLQSTEECEFSYISDHDSDVETELKDEVPAACSNSKTGYICKNKIVLSKLPKLSLAENKAKVKEVSQLRKRNIHTNGVKCYPRPRDAWQMLISDDLLELIATSTNENMSKTNNHPTTMKEIKTFIGILYYQGIMRPTHEKCSDLWDYDFGPICIQRAMNYQRFKVLLENISFDTEDDSGMMQLDIMKRIRKVFEIFAMNCRTSMEIGNIAVIDETLLPVWGPCPFRYSIKNKEMKEGMKVVLVVDPKNFYISNLDVITDSYFRSEDIAFKLVQHLAGSGRIIIMDSWFTSVNLIDTLRKEYSLFSIAALNPNDENIPPIFLSSDRKSKPFLNGFFDNGTVLSSFVSANSKIGNILSNEPSHYKRSHTTHSAVSEYKKYKSTVEVVDVLMHYYTTMQNTNDWTLSLFFMLLNIASVNAQVLWSVSNNGNVLNRRLFIRKLASSLLETLDVGHDLSESLALKRPRLNPVENRVSYNNRRRCRICIQTSKRDRRTTQACFKCGISICKEHTGVESDKDEEEMEDEEMNEDQAFNAPNVPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKSHNRMHPKLRPNPFNPKARLMPNPISHKMQLQLPQLQQSIKLMPKKIIPPKPIPIRSLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFIHQDDADKDDDVQNHNQNYDTVDMDSENEIEIARQPDNEEETGVRPENEAEDEEENAGDEHQNDLGKENEGIDESREKVSEEPHEDGEEDAKEPEETDKDVDDSQENYEYDQDGDPPIAPVVEINEDMQNSYNSEAIENEEEELEDYTADDGGDGEEEAKELDPDKQYVTKTQREFILKYRDIIEQINTQRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYKEGGVTDDQVIDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVVLACVHCGSRFKDKSIWKKHIRNGECTVYIACDLCTEKFGNVQDFNEHAVAVHAGNFDPDSQSKCIDGRPTDCPICDKKCCSYQALVKHLKAIHNEETPHYCQHCEAKFEHAADLDKHTYTDHSLKMLGTHASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCGNSYSSPQKLSQHVQQTHPGSSTIGAGDTDFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRPGDSRSFAPQIIGKPIHFSMIQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHNDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANMTNSMQSTPQESMQFSCELCYKRFPLKASLWKHKRAKHGIINPSATDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKSQEMTQEVEVEFEERETERPDPNAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYVSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSAPSPLTKRRLPPEVEVTVVNPNKKLRSDDSGEMDQSTNASGPSDDRYCRICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGSANLQDEEGSACEVCGERFDDLDALNAHRETQHGDEESAGDSEDDGSAPPAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205097;
- 90% Identity
- iTF_01205097;
- 80% Identity
- -