Basic Information

Insect: Pieris mannii
Gene Symbol: Sall1
Assembly: GCA_029001895.1
Location: CM054832.1:12216819-12218192[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0016 0.14 13.3 0.0 2 23 149 170 149 170 0.97

2 11 0.00057 0.048 14.7 1.6 1 23 176 199 176 199 0.95

3 11 5.9e-05 0.005 17.8 0.7 1 23 206 228 206 228 0.98

4 11 0.00038 0.032 15.3 2.0 1 23 234 256 234 256 0.96

5 11 9.9e-05 0.0084 17.1 1.0 1 23 262 284 262 284 0.97

6 11 6.5e-06 0.00055 20.8 2.8 1 23 290 312 290 312 0.96

7 11 1.5e-06 0.00013 22.8 0.5 3 23 320 341 319 341 0.97

8 11 0.0054 0.46 11.6 0.9 2 23 347 365 346 365 0.83

9 11 0.00064 0.055 14.6 0.2 1 23 371 394 371 394 0.92

10 11 0.13 11 7.3 3.3 1 23 400 424 400 425 0.89

11 11 2.9e-07 2.4e-05 25.1 2.8 1 23 431 453 431 453 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0016	0.14	13.3	0.0	2	23	149	170	149	170	0.97
2	11	0.00057	0.048	14.7	1.6	1	23	176	199	176	199	0.95
3	11	5.9e-05	0.005	17.8	0.7	1	23	206	228	206	228	0.98
4	11	0.00038	0.032	15.3	2.0	1	23	234	256	234	256	0.96
5	11	9.9e-05	0.0084	17.1	1.0	1	23	262	284	262	284	0.97
6	11	6.5e-06	0.00055	20.8	2.8	1	23	290	312	290	312	0.96
7	11	1.5e-06	0.00013	22.8	0.5	3	23	320	341	319	341	0.97
8	11	0.0054	0.46	11.6	0.9	2	23	347	365	346	365	0.83
9	11	0.00064	0.055	14.6	0.2	1	23	371	394	371	394	0.92
10	11	0.13	11	7.3	3.3	1	23	400	424	400	425	0.89
11	11	2.9e-07	2.4e-05	25.1	2.8	1	23	431	453	431	453	0.99

Sequence Information

Coding Sequence: ATGGTTAACATATGCAGAATTTGCTTAGACAAAGCTGGGACTATTTCCCTTTATTCTGCGCAATCAAATGAGATTCAGTACTGTACAAAACTATCACGTTTTACAAATGTTTCAATGAATGAAGACGATGGTTTACCTACTCATATCTGTGAAGAATGTGTAGTAGAGCTTAACACCTGTTATCAATTTGTGCTTAAATGTGAGGCTTCAGAAAAAGCTTTAGAATGCCTCAACACTGAGAATTATGATTATcatttcgatttaaaaattgaatctgatgatataaatattgaagaaaCAAATTTCGTTGTTCCAGACAGCCGCATAGAACAAAGTTCACCTGTAAAAGTTTCTCCAGACACTGTGAATGATATCAAAGAAAGTAACCAGGAAGAATGTAAGGTGAAAAAAACCCGAAAAAGGGTTAGCACTAATGCTCAAGCACAGTGTGTGGTATGTGGACTACTCGCTAAAAGCAATTCGGCCCTTGAGATACATATGCGTGTTCACACAAGAGAAAAACCATTCATATGTGATCAATGTGATGCTAGATTCACATGCAAAGGTAATTTAAAACGCCATATAGATGTATATCATTCTGTCAGAGAGCGCAAGTTCACTTGTGAAAAGTGTGGCAATAGTTTCTTTAGTAAAAATGACATTATAACTCATATTCGTGTTCACACTAATGAAACACCATTTGCTTGCATGTACTGTCCTAAGAGGTTTAAACAGTTAACATCAAGAAATCGCCATCAAACTATTCATACAGGCTTAAAGCCTTATGCATGTCCTCtctgtaacaaaaaatttgCTCATCGGAATCTGGTAGTAAAACATCAGAGTGTTCATAGTGATGAAAGGAAATTCACATGTCACCTGTGCAATAAATCTCTGAAAACTAAGTCGAGCCTCAGAGTGCATATGGGCTTGCATCAAAAGgagaaaaaaaacatctgTAGTACTTGTGGGATGTCATTCTCCATGAAAGGAAATCTACAGAATCATATAAGAAGAGTTCACTCAGAGAAATCGGGTCAATGCaatgtttgtatgaaaacaTTTTCTAATCTGGAAGTACATATGCGGCGGCACACCGGAGAGAGGCCCTATGTTTGTCCTGTTTGTAATGTAGCATTCGCCCTCAAAGGTGCATTAAAGTACCACATGTTTTTCAAACACGAAagctgtaataaatttaagtgtaCAGTGGATGACTGCAAAAAGACTTTTCCAACAGCATATATTTTAGAGTGCCACTTGTTGAAGCATCATTCAAAGAACACACCCTATGTTTGCCCGTACTGCCACAAAGGATACTACCGCACTAGTGATCTAACAAGGCACATAAAAACTCACAAGTTTGATgtttaa
Protein Sequence: MVNICRICLDKAGTISLYSAQSNEIQYCTKLSRFTNVSMNEDDGLPTHICEECVVELNTCYQFVLKCEASEKALECLNTENYDYHFDLKIESDDINIEETNFVVPDSRIEQSSPVKVSPDTVNDIKESNQEECKVKKTRKRVSTNAQAQCVVCGLLAKSNSALEIHMRVHTREKPFICDQCDARFTCKGNLKRHIDVYHSVRERKFTCEKCGNSFFSKNDIITHIRVHTNETPFACMYCPKRFKQLTSRNRHQTIHTGLKPYACPLCNKKFAHRNLVVKHQSVHSDERKFTCHLCNKSLKTKSSLRVHMGLHQKEKKNICSTCGMSFSMKGNLQNHIRRVHSEKSGQCNVCMKTFSNLEVHMRRHTGERPYVCPVCNVAFALKGALKYHMFFKHESCNKFKCTVDDCKKTFPTAYILECHLLKHHSKNTPYVCPYCHKGYYRTSDLTRHIKTHKFDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202659; iTF_01206770; iTF_01203447; iTF_01205116; iTF_01205918; iTF_00879042;
90% Identity: iTF_01202659;
80% Identity: -