Pmel017828.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris melete
Gene Symbol
Sall1
Assembly
GCA_963693345.1
Location
CAVNZK010000171.1:485941-487314[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0015 0.15 13.3 0.0 2 23 149 170 149 170 0.97
2 11 0.00052 0.052 14.7 1.6 1 23 176 199 176 199 0.95
3 11 5.5e-05 0.0055 17.8 0.7 1 23 206 228 206 228 0.98
4 11 0.00035 0.035 15.3 2.0 1 23 234 256 234 256 0.96
5 11 7e-05 0.007 17.5 0.9 1 23 262 284 262 284 0.97
6 11 4.2e-06 0.00042 21.3 3.7 1 23 290 312 290 312 0.97
7 11 3.4e-07 3.4e-05 24.7 0.3 3 23 320 341 319 341 0.97
8 11 0.005 0.5 11.6 0.9 2 23 347 365 346 365 0.83
9 11 0.00059 0.059 14.6 0.2 1 23 371 394 371 394 0.92
10 11 0.22 22 6.4 3.6 1 23 400 424 400 425 0.89
11 11 2.7e-07 2.7e-05 25.1 2.8 1 23 431 453 431 453 0.99

Sequence Information

Coding Sequence
ATGGTGAATATATGCAGAATTTGCTTAGACAAAGCTGGGACTATTTCTCTTTACGGTGCgcaattaaatgaaattcagTACTGTACAAAACTAGCACGGTTTATAAATGTATCAATGAATGAAGACGACGGTTTTCCTACACATATCTGTGAAGAATGTGTAGGAGAGCTTAACACCTGTTATCAATTTGTGCTTAAATGTGAGGCTTCAGAAAAAGCTTTAGAATGCCTGAACCCTGAGAATTATGATTATCATTACGATTTAAAACTTGAATCCGATGATATTAATACTGAAGAAACAAATTTCAGTACTGCAGACAGATGTGAAGATCAAAGTTCAGCTGTAAAACGTTTTACAGACACTGTGAatgatataaaagaaagtaaaCTAGAAGACTGTAAGGTGAAAAAAACTCGAAAAAGGCTTAGCAATAATGCACAAGCACAGTGTGTGGTATGTGGACTTCTTGCTAAAAGCAATTCAGCCCTTGAGATACACATGCGTGTTCACACAAGAGAAAAACCATTCATATGTGATCAATGTGATGCTAGATTCACATGCAAAGGTAATTTAAAACGCCATATAGACGTCTATCATTCTGTCAGAGAGCGCAAGTTCACTTGTGAAAAGTGTGGCAATAGTTTCTTTAGTAAAAATGACATCATAACTCATATTCGTGTtcacactaacgaaacaccATTTGCTTGCATGTACTGTCCTAAGAGATTTAAACAGTTAACATCAAGAAATCGCCATCAAACAATTCATACAGGCTTGAAGCCTTATGCTTGTCCCCTATGTAACAAGAAATTTGCTCATCGAAATCTGGTGGCAAAGCATCAAAGTGTCCATAGTGATGAAAGGAAATTCACATGTCACCTGTGCAATAAATCTCTGAAAACTAAGTCAAGCCTCAGAGTGCATATGAGCTTGCATCAAAGGgagaaaaaaaacatctgTAATATTTGTGGGATGTCATTCTCTATGAAAGGAAATCTACAGAATCATATAAGAAGAGTTCACTCAGAGAAATCGGGTCAATGCAATGTCTGTATGAAAACATTTTCTAATCTGGAAGTACATATGAGGCGGCACACCGGAGAGAGGCCCTATGTTTGTCCTGTTTGTAATGTAGCCTTCGCCCTCAAAGGTGCATTAAAGTACCACATGTTTTTCAAACACGAGagctgtaataaatttaagtgtACAATGGATGAATGCAAAAAGACTTTTCCAACAGCATATATATTAGAGTGCCACCTGTTGAAGCATCATTCGAAGAACACACCCTATGTATGCCCATACTGTCACAAAGGATACTACCGCACTAGTGATCTCACAAGGCACATCAAGACTCACAAGTTCGATGTTTAG
Protein Sequence
MVNICRICLDKAGTISLYGAQLNEIQYCTKLARFINVSMNEDDGFPTHICEECVGELNTCYQFVLKCEASEKALECLNPENYDYHYDLKLESDDINTEETNFSTADRCEDQSSAVKRFTDTVNDIKESKLEDCKVKKTRKRLSNNAQAQCVVCGLLAKSNSALEIHMRVHTREKPFICDQCDARFTCKGNLKRHIDVYHSVRERKFTCEKCGNSFFSKNDIITHIRVHTNETPFACMYCPKRFKQLTSRNRHQTIHTGLKPYACPLCNKKFAHRNLVAKHQSVHSDERKFTCHLCNKSLKTKSSLRVHMSLHQREKKNICNICGMSFSMKGNLQNHIRRVHSEKSGQCNVCMKTFSNLEVHMRRHTGERPYVCPVCNVAFALKGALKYHMFFKHESCNKFKCTMDECKKTFPTAYILECHLLKHHSKNTPYVCPYCHKGYYRTSDLTRHIKTHKFDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01204268;
90% Identity
iTF_01202659;
80% Identity
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