Lari005986.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- Sall1
- Assembly
- GCA_951799465.1
- Location
- OX637267.1:8253691-8255085[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0015 0.096 13.3 0.0 2 23 152 173 152 173 0.97 2 11 0.00054 0.034 14.7 1.6 1 23 179 202 179 202 0.95 3 11 5.6e-05 0.0035 17.8 0.7 1 23 209 231 209 231 0.98 4 11 0.00043 0.027 15.0 2.1 1 23 237 259 237 259 0.96 5 11 0.00054 0.034 14.7 1.0 3 23 267 287 265 287 0.97 6 11 4.3e-06 0.00027 21.3 3.7 1 23 293 315 293 315 0.97 7 11 5.2e-07 3.3e-05 24.2 0.3 3 23 323 344 322 344 0.97 8 11 0.0083 0.52 11.0 0.8 2 23 350 368 349 368 0.87 9 11 0.0034 0.21 12.2 0.2 1 23 374 397 374 397 0.90 10 11 0.22 14 6.5 3.5 1 23 403 427 403 428 0.89 11 11 7.2e-05 0.0045 17.4 3.3 1 23 434 456 434 456 0.98
Sequence Information
- Coding Sequence
- ATGATGAATATATGCAGAATTTGCCTAGACAAAACTGGGACTGTTTCCCTTTATTCTGAGGAATCAAATGAAATTAAGCACTGTACTAAATTAGCACGTCTTATAAAGATATCACTAAGTGAAGACAACGGTTTACCTACACATATTTGCGAAGAATGTGCAGTGGAGCTTAATTCTTCTTATCAATTTGTACTTAAATGTGAGGCTTCAGAAAAAGCTTTAGGATGCCTTAACCCTTTGGATTTTGACTATCATTATGACCTAAAAATTGAATCTGTGGATATTACTGAACCTACTGAATCAGACTTGTCTACCAGAAACAGATGTGTAGATCAAAACCTAGACGTTAAACTTTTTTCAGACACTGAGCATGATgtaaaagaagaagaagataTTAAACATGAAGAACTAAAGGtgagaaaaaagaaaaggcCTAGCAATAATTCCCAAGCACAGTGTGTGGTGTGTGGACTACTCGCTAAAAGCAATTCAGCCCTTGAAATACACATGCGTGTTCACACTAGGGAAAAACCATTTATTTGTGATCAATGTGATGCCAGATTCACATGCAAAGGTAATTTAAAACGGCATATCGATGTTTACCATTCTGTCAGAGAACGTAAGTTTACATGTGAAAAGTGTGGTAACAGCTTCTTTagtaaaaatgatattataacTCATATTCGTGTGCACACTAACGAAACACCATTTGCTTGCATGTACTGTCCTAAGAAGTTTAAACAGTTAACATCGAGAAATCGTCATCAAACTATTCACACAGGTCTGAAGCCTTATGGGTGTCCGCTCTGTAACAAAAAGTTTGCTCATCGCAATCTGGTTGTAAAGCACCAAAGCGTTCACAGTGATGAAAGGAAATTCACATGCCATCTGTGCAATAAGTCTCTCAAAACAAAGTCCAGTCTCCGAGTCCACATGAGCTTGCACCaaagagagaagaaaaacATTTGTAGTATTTGTGGGATGTCATTCTCCATGAAAGGAAATTTACAGAATCACATAAGAAGAGTTCACTCGGAGAAATCTGGTCAATGCAGTGTCTGCATGAAAACCTTCTCCAACCTCGAAGTACACATGAGAAGGCACACGGGCGAGAGGCCCTATCTGTGCCCCGTTTGCAACGTCGCCTTCGCTCTCAAGGGGGCTTTAAAGTACCACATGTTCTTCAAACACGAGAGCAGTAACAAGTTCAAATGCACCATGGAGGAATGCAAAAAGACGTTCCCCACAGCTTACATACTGGAGTGTCACTTGCTGAAGCACCACTCCAAGAATACGCCGTTCGTGTGTCCGTACTGCTGCAAAGGCTACTATCGCACCAGTGACCTCACCAGACACATCAAAACGCACAAGTTTGATGTTCCAGCGTTGAGTTAG
- Protein Sequence
- MMNICRICLDKTGTVSLYSEESNEIKHCTKLARLIKISLSEDNGLPTHICEECAVELNSSYQFVLKCEASEKALGCLNPLDFDYHYDLKIESVDITEPTESDLSTRNRCVDQNLDVKLFSDTEHDVKEEEDIKHEELKVRKKKRPSNNSQAQCVVCGLLAKSNSALEIHMRVHTREKPFICDQCDARFTCKGNLKRHIDVYHSVRERKFTCEKCGNSFFSKNDIITHIRVHTNETPFACMYCPKKFKQLTSRNRHQTIHTGLKPYGCPLCNKKFAHRNLVVKHQSVHSDERKFTCHLCNKSLKTKSSLRVHMSLHQREKKNICSICGMSFSMKGNLQNHIRRVHSEKSGQCSVCMKTFSNLEVHMRRHTGERPYLCPVCNVAFALKGALKYHMFFKHESSNKFKCTMEECKKTFPTAYILECHLLKHHSKNTPFVCPYCCKGYYRTSDLTRHIKTHKFDVPALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204268;
- 90% Identity
- -
- 80% Identity
- -