Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989946.1:4190875-4202214[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00043 0.035 14.8 0.1 3 23 227 247 225 247 0.97

2 10 0.14 11 6.9 0.3 3 23 270 291 269 291 0.95

3 10 1.7e-05 0.0014 19.2 1.3 2 23 314 335 313 335 0.97

4 10 0.00044 0.036 14.8 0.1 1 23 339 361 339 361 0.98

5 10 0.0012 0.1 13.4 0.0 2 23 367 389 366 389 0.92

6 10 0.066 5.4 7.9 0.3 2 23 396 418 395 418 0.88

7 10 3.9e-05 0.0032 18.1 1.2 1 23 425 448 425 448 0.97

8 10 0.0028 0.23 12.3 2.0 1 20 454 473 454 476 0.92

9 10 1.5e-06 0.00012 22.6 2.0 1 23 482 504 482 504 0.99

10 10 2.8e-05 0.0023 18.5 3.4 1 23 510 533 510 533 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00043	0.035	14.8	0.1	3	23	227	247	225	247	0.97
2	10	0.14	11	6.9	0.3	3	23	270	291	269	291	0.95
3	10	1.7e-05	0.0014	19.2	1.3	2	23	314	335	313	335	0.97
4	10	0.00044	0.036	14.8	0.1	1	23	339	361	339	361	0.98
5	10	0.0012	0.1	13.4	0.0	2	23	367	389	366	389	0.92
6	10	0.066	5.4	7.9	0.3	2	23	396	418	395	418	0.88
7	10	3.9e-05	0.0032	18.1	1.2	1	23	425	448	425	448	0.97
8	10	0.0028	0.23	12.3	2.0	1	20	454	473	454	476	0.92
9	10	1.5e-06	0.00012	22.6	2.0	1	23	482	504	482	504	0.99
10	10	2.8e-05	0.0023	18.5	3.4	1	23	510	533	510	533	0.98

Sequence Information

Coding Sequence: ATGAGTGCAAAAAAGGCCAAGGGACCCGTAATCGATTCGGGCATATGTCGTTGTTGCGGGTCCATGAAGAAATGTAGAGTTCTAAACGTTGAATATAATAGTTTTGGGAAGAATGAGGTGTATTCTGATATGATTATGGATTGCTTTGGCTTATTGTTATCTCAACTAGATAGTGTAATGGCTGATCGTCTTGTTTGTGCAGTTTGTGTACACCGAATAAGAGATGCATGTGATTTCCGACAACAAATACTTAAATGTGAAGAGGCATTTTTACGAGCAAAGATTTATGATGCTGATGATAATGAGCAACCATTGGAGCCACCAAAATTGGAGGTCAAGACTGAACATTTAGAGGAAGATGATCGATCTCCATCACCAACATTGGATATTGAAGATATACCCCTCAGTGATATTAAAAAAGAAATGAATCCGTTATGCGTCAAGCCGGAAACAGAAGTTGAGGAAATAAAGAATGTGAAAACACTATCTGAAGAACCACTGCCCAAGAAGCCGAAAATTATTAAGAAAAAATGTCTTCCACAACCTAAACTGCCCATGTCGATGTTACAACAGAAAATCCGGGAACAAGATCCATCTTACACGACCAAATCAAATATATACACAATAGTTGAGAACTCCTTCGCTTGCCCCTTCAGGTGCAGACACAACAACTTGTTGTGCTACTACTGTGCTGAAACATTCACAGATCCAGAATTACTAAGAAATCATACAATATCACACAAAACAAAGAATTTCTTCATGGCTGAGAGGAATTCAACACTCAAACTTGATGTTACCAGAGTTGACTGCCGACTGTGTCCAACCAAGATAAACAGTCTGGATGAGTTTAAGCAGCACATATCAAGTGTACACTCAAAGAAGTATTATTTCAACGCTAAAGACAGCATCCTACCATTCCGGTTACTCAAGGAGGACACCAAATGTGCCATATGTGACCGTACATTCCCCTACTTCCATGCCCTGAACAGGCACATGAATGAACACTACAATAACTATGTGTGTGAATTGTGCGGATTGGGCTTTGTGGACCGTGCCAGGTTCCTTGTGCATCAGCAGAGGCATGAAAAAGCAAGTGTGCCGTGTGAAATTTGCGGCAAAGTGTTTAGAATGTTGAGTTATAAGGAAGTGCATGTCGATAGGGTTCATAATAAGAGGGGCAGGGTGTACTGTCCCAAGTGTGATGTGACGTTTATGAGTTATCAGCAGAAGTTAAAACATTTAGTGTTAGTTCATGGTGAGGAACCGTTGTCATTTCCATGTAATTTGTGTGACCGAGTGTTTGATACAAGAAGGATGTTCACAATACATAAACGGAAGGTCCATTTGAAGGATTTCAGATATGAATGCCAATGTTGTGGCCAGAAATTCTTCACACGATCAGCACTCAACAATCATATGCCGGTACACACCGGCGAAAGGAACTTTAAGTGCAAATTTTGTGACAAGTCCTACCCTCGTTTGAAGACTTTGAAGGATCATATACGAATACATACGAATGACAGAAGATATAGATGTCATATATGCGGTCAAGCGTTTATCCAGAATTGCAGCTTGAAGGGACATTTGAAAAGCCAGCATCCGGAGTATACATAG
Protein Sequence: MSAKKAKGPVIDSGICRCCGSMKKCRVLNVEYNSFGKNEVYSDMIMDCFGLLLSQLDSVMADRLVCAVCVHRIRDACDFRQQILKCEEAFLRAKIYDADDNEQPLEPPKLEVKTEHLEEDDRSPSPTLDIEDIPLSDIKKEMNPLCVKPETEVEEIKNVKTLSEEPLPKKPKIIKKKCLPQPKLPMSMLQQKIREQDPSYTTKSNIYTIVENSFACPFRCRHNNLLCYYCAETFTDPELLRNHTISHKTKNFFMAERNSTLKLDVTRVDCRLCPTKINSLDEFKQHISSVHSKKYYFNAKDSILPFRLLKEDTKCAICDRTFPYFHALNRHMNEHYNNYVCELCGLGFVDRARFLVHQQRHEKASVPCEICGKVFRMLSYKEVHVDRVHNKRGRVYCPKCDVTFMSYQQKLKHLVLVHGEEPLSFPCNLCDRVFDTRRMFTIHKRKVHLKDFRYECQCCGQKFFTRSALNNHMPVHTGERNFKCKFCDKSYPRLKTLKDHIRIHTNDRRYRCHICGQAFIQNCSLKGHLKSQHPEYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00430895;
90% Identity: iTF_01204289; iTF_01206787; iTF_01203469; iTF_01205946;
80% Identity: -