Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000066.1:1879402-1885533[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00043 0.027 14.8 0.1 3 23 225 245 223 245 0.97

2 10 0.051 3.2 8.3 0.2 3 23 268 289 266 289 0.95

3 10 1.8e-05 0.0011 19.2 1.3 2 23 312 333 311 333 0.97

4 10 0.00045 0.027 14.8 0.1 1 23 337 359 337 359 0.98

5 10 0.0035 0.21 12.0 0.0 2 23 365 387 364 387 0.90

6 10 0.067 4.1 8.0 0.3 2 23 394 416 393 416 0.88

7 10 3.9e-05 0.0024 18.1 1.2 1 23 423 446 423 446 0.97

8 10 0.0028 0.17 12.3 2.0 1 20 452 471 452 474 0.92

9 10 1.5e-06 9.4e-05 22.6 2.0 1 23 480 502 480 502 0.99

10 10 2.9e-05 0.0018 18.5 3.4 1 23 508 531 508 531 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00043	0.027	14.8	0.1	3	23	225	245	223	245	0.97
2	10	0.051	3.2	8.3	0.2	3	23	268	289	266	289	0.95
3	10	1.8e-05	0.0011	19.2	1.3	2	23	312	333	311	333	0.97
4	10	0.00045	0.027	14.8	0.1	1	23	337	359	337	359	0.98
5	10	0.0035	0.21	12.0	0.0	2	23	365	387	364	387	0.90
6	10	0.067	4.1	8.0	0.3	2	23	394	416	393	416	0.88
7	10	3.9e-05	0.0024	18.1	1.2	1	23	423	446	423	446	0.97
8	10	0.0028	0.17	12.3	2.0	1	20	452	471	452	474	0.92
9	10	1.5e-06	9.4e-05	22.6	2.0	1	23	480	502	480	502	0.99
10	10	2.9e-05	0.0018	18.5	3.4	1	23	508	531	508	531	0.98

Sequence Information

Coding Sequence: ATGAGTGCAAAAAAGGGCAAGGGACCCGTAATCGACTCGGGCATATGTCGTTGTTGCGGATCAATGAAGAAATGTAGAGTTCTAAACGTTGAATATAATAGTTTTGGGAAGAATGAGGTGTATTCTGATATGATCATGGATTGCTTTGGCTTATTATTATCGCAGCTTGATAGTGTAATGGCTGATCGTCTTGTTTGTGCGGTTTGTGTACATCGAATAAGAGATGCATGTGATTTCCGACAACAAATACTAAAATGTGAAGAGGCATTTTTACGGGCAAAGATTTATGATGCTGAAGATGCTGAACAACCATTGGAGCCACCAAAATTGGAGGTCAAGACTGAACATTTAGAAGAAGATGATAGATCTCCATCACCAACATTGGACATTGAAGATATACCTCTCAgtgatattaaaaaagaaatgaatCCGTTATCTGTCAAGCCGGAAACAAAACAAGTTGAGGAAATAAAGGATGTTAAAACACTACCTGTGCCCAAGAAgccaaaaattattaagaaaaagtGTCTTCCTCAACCTAAACTGCCCATGTCGATGTTACAACAGAAAATCCGAGAACAAGATCCATCTTACACATCCAAATCTAACATATACACAATAGTTGAGAACTCCTTCGCTTGCCCCTTCAGATGCAGACACAATAACCTGTTATGCTACTACTGTGCTGAAACATTCACCGATCCAGAGTTGCTAAGAAATCATACAATATCAcacaaaacaaagaattttTTCATGTCGGAGAGGAATTCAACCCTCAAACTCGATGTTACAAGAATTGACTGTCGACTGTGTCCAACCAAGATCAACAGTTTAGATGAGTTCAAGAAGCATATATCAAGTGTACACTCcaagaagttttatttcaaCGCAAAGGACAACATCCTTCCATTCCGGTTGCTCAAGGAGGACACCAAATGTGCCATATGTGACCGTACATTCCCCTACTTCCATGCTTTAAACAGACACATGAACGAACATTACAACAACTATGTGTGTGAATTGTGCGGTTTGGGCTTTGTGGACCGGGCCAGGTTTCTTGTGCATCAACAGAGACATGAAAAAGCAAGTGTACCGTGTGAGATTTGTGGTAAAGTGTTTAGAATGGTCAGTTATAAGGAAGTGCATGTCGATAGGGTTCATAATAAGAAGGGCAGGGTTTATTGTCCTAAGTGCGATGTGACGTTTATGAGTTATCAGCAGAAGTTAAAACATTTAGTGCTAGTTCATGGTGAGGAACCGCTGTCCTTTCCATGTAATTTGTGTGACCGTGTGTTTGATACAAGACGGATGTTCACAATACATAAGCGGAAGGTGCATTTGAAGGATTTCAGatatgAATGCCAATGTTGTGGCCAGAAATTCTTCACTCGATCAGCACTCAACAATCATATGCCGGTACACACCGGTGAAAGGAACTTTAAATGCAAATTTTGTGACAAGTCATACCCTCGTTTGAAGACTTTGAAGGACCACATACGAATACATACGAATGACAGAAGATATAGATGCCATATATGTGGGCAAGCGTTTATTCAGAATTGCAGCTTGAAGGGTCATTTGAAAAGCCAACATCCGGAGTATACATAG
Protein Sequence: MSAKKGKGPVIDSGICRCCGSMKKCRVLNVEYNSFGKNEVYSDMIMDCFGLLLSQLDSVMADRLVCAVCVHRIRDACDFRQQILKCEEAFLRAKIYDAEDAEQPLEPPKLEVKTEHLEEDDRSPSPTLDIEDIPLSDIKKEMNPLSVKPETKQVEEIKDVKTLPVPKKPKIIKKKCLPQPKLPMSMLQQKIREQDPSYTSKSNIYTIVENSFACPFRCRHNNLLCYYCAETFTDPELLRNHTISHKTKNFFMSERNSTLKLDVTRIDCRLCPTKINSLDEFKKHISSVHSKKFYFNAKDNILPFRLLKEDTKCAICDRTFPYFHALNRHMNEHYNNYVCELCGLGFVDRARFLVHQQRHEKASVPCEICGKVFRMVSYKEVHVDRVHNKKGRVYCPKCDVTFMSYQQKLKHLVLVHGEEPLSFPCNLCDRVFDTRRMFTIHKRKVHLKDFRYECQCCGQKFFTRSALNNHMPVHTGERNFKCKFCDKSYPRLKTLKDHIRIHTNDRRYRCHICGQAFIQNCSLKGHLKSQHPEYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00430895;
90% Identity: iTF_01202677;
80% Identity: -