Basic Information

Insect: Pieris mannii
Gene Symbol: -
Assembly: GCA_029001895.1
Location: CM054850.1:2179091-2187580[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00052 0.044 14.8 0.1 3 23 224 244 222 244 0.97

2 10 0.12 10 7.4 0.2 3 23 267 288 265 288 0.95

3 10 2.1e-05 0.0018 19.2 1.3 2 23 311 332 310 332 0.97

4 10 0.00054 0.045 14.8 0.1 1 23 336 358 336 358 0.98

5 10 0.0042 0.36 12.0 0.0 2 23 364 386 363 386 0.90

6 10 0.08 6.8 8.0 0.3 2 23 393 415 392 415 0.88

7 10 4.7e-05 0.004 18.1 1.2 1 23 422 445 422 445 0.97

8 10 0.0034 0.29 12.3 2.0 1 20 451 470 451 473 0.92

9 10 1.8e-06 0.00016 22.6 2.0 1 23 479 501 479 501 0.99

10 10 3.5e-05 0.0029 18.5 3.4 1 23 507 530 507 530 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00052	0.044	14.8	0.1	3	23	224	244	222	244	0.97
2	10	0.12	10	7.4	0.2	3	23	267	288	265	288	0.95
3	10	2.1e-05	0.0018	19.2	1.3	2	23	311	332	310	332	0.97
4	10	0.00054	0.045	14.8	0.1	1	23	336	358	336	358	0.98
5	10	0.0042	0.36	12.0	0.0	2	23	364	386	363	386	0.90
6	10	0.08	6.8	8.0	0.3	2	23	393	415	392	415	0.88
7	10	4.7e-05	0.004	18.1	1.2	1	23	422	445	422	445	0.97
8	10	0.0034	0.29	12.3	2.0	1	20	451	470	451	473	0.92
9	10	1.8e-06	0.00016	22.6	2.0	1	23	479	501	479	501	0.99
10	10	3.5e-05	0.0029	18.5	3.4	1	23	507	530	507	530	0.98

Sequence Information

Coding Sequence: ATGAGTGCAAAAAAGGCCAAGGGACCCGTAATCGATTCGGGCATATGTCGTTGTTGCGGGTCCATGAAGAAATGTCGAGTTCTAAACGTTGAATATAATAGTTTTGGGAAGAATGAGGTGTATTCTGATATGATCATGGATTGCTTTGGCTTATTGTTATCTCAACTAGATAGTGTAATGGCTGATCGTCTTGTTTGTGCGGTTTGTGTACATAGAATAAGAGATGCATGTGATTTCCgacaacaaatattaaaatgtgaaGAGGCATTTTTACGGGCAAAGATTTATGATGCTGATGATACTGaaCAACCCTTGGAACCACCAAAATTGGAGGTCAAGACTGAACATTTAGAAGAAGATGTTCGATCACCATCGCCAATATTGGACATTGAGGATATGCCTCTCAgtgatattaaaaaagaaatgaatCCATTATCTGTGAAGCCGGAAATGAAACAAGTGGTAATAAAGGATGTTAAAACACTGTCTGTGCCCAAGAAgccaaaattaattaagaaaaaatgtcTCCCACAACCTAaACTGCCCATGTCGATGTTACAACAGAAAATCAGGGAACAAGATCCATCTTACACGTccaaatcaaatatatacacAATAGTTGAGAATTCCTTCGCTTGCCCCTTCAGATGCCGTCACAATAACTTGCTATGTTACTACTGTGCTGAGACCTTCACCGATCcagaattattaagaaatcatACAATATCACACAAAACGAAGAACTTTTTCATGGCAGAAAGGAACTCGACACTTAAGCTTGATGTGACGAGAATTGACTGCCGGCTGTGCCCAACCAAGATAAACAGTTTGGATGACTTCAAACAGCATATATCAAGTGTTCACTCAAAGAAGTATTATTTCAACGCTAAAGATAGCATCCTTCCATTCCGGCTACTCAAGGAGGATACAAAGTGTGCCATATGTGACCGGACATTCCCATACTTCCATGCCCTAAACAGGCACATGAATGAACATTACAACAACTATGTGTGTGAGTTGTGCGGTTTGGGGTTTGTGGACCGGGCCAGGTTTCTTGTGCATCAGCAGAGGCATGAGAAAGCAAGTGTGCCGTGTGAGATTTGTGGTAAAGTGTTCAGAATGGTGAGTTATAAGGAGGTGCATGTTGATAGGGTTCATAATAAAAGGGGGAGAGTCTACTGCCCCAAGTGTGATGTCACATTTATGAGTTATCAGCAGAAGTTGAAACATTTAGTGTTGGTGCATGGTGAGGAACCGCTGTCCTTTCCGTGTAATTTGTGTGACCGAGTGTTTGATACAAGACGGATGTTCACAATTCATAAGCGGAAGGTGCATTTGAAGGATTTCCGATATGAATGCCAATGTTGCGGACAGAAATTCTTCACTCGATCAGCGCTCAACAATCATATGCCGGTACACACCGGCGAACGTAACTTTAAATGCAAATTTTGTGACAAGTCCTACCCTCGTTTGAAAACTTTGAAAGATCACATACGAATACATACGAATGACAGAAGATATCGATGTCATATATGCGGGCAAGCGTTTATCCAGAATTGCAGCTTGAAGGGGCATTTGAAAAGCCAACATCCGGAGTATTCATAG
Protein Sequence: MSAKKAKGPVIDSGICRCCGSMKKCRVLNVEYNSFGKNEVYSDMIMDCFGLLLSQLDSVMADRLVCAVCVHRIRDACDFRQQILKCEEAFLRAKIYDADDTEQPLEPPKLEVKTEHLEEDVRSPSPILDIEDMPLSDIKKEMNPLSVKPEMKQVVIKDVKTLSVPKKPKLIKKKCLPQPKLPMSMLQQKIREQDPSYTSKSNIYTIVENSFACPFRCRHNNLLCYYCAETFTDPELLRNHTISHKTKNFFMAERNSTLKLDVTRIDCRLCPTKINSLDDFKQHISSVHSKKYYFNAKDSILPFRLLKEDTKCAICDRTFPYFHALNRHMNEHYNNYVCELCGLGFVDRARFLVHQQRHEKASVPCEICGKVFRMVSYKEVHVDRVHNKRGRVYCPKCDVTFMSYQQKLKHLVLVHGEEPLSFPCNLCDRVFDTRRMFTIHKRKVHLKDFRYECQCCGQKFFTRSALNNHMPVHTGERNFKCKFCDKSYPRLKTLKDHIRIHTNDRRYRCHICGQAFIQNCSLKGHLKSQHPEYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00430895;
90% Identity: iTF_01202677;
80% Identity: -