Pbra013830.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- zfy1
- Assembly
- GCA_905147105.1
- Location
- LR989935.1:217262-223364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2 1.8e+02 3.1 0.3 2 23 11 32 10 32 0.95 2 13 0.047 3.9 8.4 2.1 1 19 1022 1040 1022 1042 0.97 3 13 4e-05 0.0033 18.1 1.1 2 23 1132 1153 1131 1153 0.97 4 13 1.3e-05 0.0011 19.6 1.1 1 23 1159 1181 1159 1181 0.99 5 13 0.00047 0.039 14.7 3.3 2 23 1188 1209 1187 1210 0.95 6 13 0.18 15 6.5 1.0 6 23 1224 1241 1222 1241 0.97 7 13 0.00015 0.012 16.3 0.5 3 23 1248 1269 1247 1269 0.97 8 13 0.0045 0.37 11.6 0.5 2 23 1285 1305 1284 1305 0.96 9 13 5.4e-05 0.0045 17.7 0.5 1 20 1311 1330 1311 1333 0.92 10 13 0.0027 0.23 12.3 0.3 1 23 1341 1363 1341 1363 0.97 11 13 0.00082 0.068 13.9 7.3 1 23 1369 1391 1369 1391 0.98 12 13 1.3e-06 0.00011 22.7 0.8 1 23 1397 1421 1397 1421 0.95 13 13 0.0017 0.14 13.0 4.4 1 23 1427 1449 1427 1450 0.95
Sequence Information
- Coding Sequence
- ATGTTGGAGGACAAGATGGATGAGAAAGTTCAGTGTCCAGTTTGTACACTTTATCTTCACAATGGGATGTCGTTAGAGACTCATTTGGATACGCATCCTAAAGATCAAGTTATTAAAGCTTTATGTTGTTTATCTTCCAAAGGCAATGCAAGTGACAGTAGAACTCCCACACCATCAATTTCTGAACGTTCTTATAGAAGTAGGACACCGGTGACAGATGATAGTGTTAGATGGTCAACTTCACGCCGCAGTGCTGAAAGCACTTATTGGAGAAGGACACCTAGCAGAAATAAGTCATTGTCATCATGTAATTCTAGAAATGACACTCCAGAAGCCAGACTGAATGTTACCAACTTTGACAGCAATGCTGTCAACAATTGTTCTGAATTTTCAAATTGTTCAGTGAAATCTTCTAAGACATCCCAGTCATATCTGCCAAGTGTGCCAACAATACAATCAAACTATAGTCAGCAATATCCATTCTATAGTGAGCCTACAGAAGACCCTGAAATAAAGTATTCTCGCAGCTCTGATTACAATGTGGCCGAAAATACAAATCAGCTGTTTGTTTATAATGTTCCAGTACTAACATCAAATGTAAAAGTTTCAACTTCTCCTACATTACCAACACCTTCAACATCTAAAAAACAGAGTAATTATGTAAAAATTCTTCCAAAACAAAACATGCTTTTAAAAAATGCTGCTAGGCTAGGTTACATTGCTCCAGGGCTCAAGCCATATCCTGTTATGATGTCCACATCTCCAACTTATATGCAAAAAAATGTTCAAACTAATATGATGGTTGCAGGAAGTGTGCCTGTGTCTGGAATATTAGATACTAAAACAGCTGTGGCTCCATTAGCAAGTCAGTTCACTCCACTTAATTCAGGCAACCTTACAACTGGGACAACTGTGGTCACTCAAAACTCACAAATTATTTATCGGGAGATGGTGCATAGTATTGATGGAAAACCTTACATCTCAAATATACCTCATGTTCTTAATACACATGAAAATATGGGGCAGAGTGGCTCATTGTATCAAAATCTAATGGTGGTTGACCCCTTTGGTAACACTTCATGTATGTACAGTACGCCCCAATCTATTTTACCCAAGACTTGTAATTCTCCAATATTCAGCAATAATTTATCACATATACCAACATCTATTGACAAGTCTATACCTAATATTGTTAATGATGTTAGTAAAACATTGATAATGGAGGTCAGCCCAATTCAGCATCAAATGTCATCTAAAACTGAGGTAATAACTATGCAACAAATGGACGAGACCATGGTTAGTTCTCCAGGCCAGACAGAAAGTGATACTGTACATAGAGCATTAGAACCAGAGACTGATTCTAAAAGTTCAACATCTGTTTCCACAAAGGGATTAAAAATTCTGAGCAATATTAAAGTGGAAGTTCCTGTTCAACACAATAAGAACATGATCAATACTATTATGGACCTAACTGGTCCAGGAGACTCTGGGTACATTCAATGTCCCCAATCACCTGAGAATATTCTACCAGATTTAAAGGAGAAACCTCAGCGTAGATCAGATATTGACAATTGCTGTCAGCCATCTAATGATAGCAATGAAAAATTTACACCACATAACTTTTCAGTTATAAAAAATGTTGGCAATCCACAGTCCTGTAAAGACTTTCCTAAGTTAAATAGTGCACAGGAGGACAATGAATCATGCGATAGCAATCCAGTTCCTGACCTTATATGTAATGAAAAGCCATCAATATCACCCTGCAGTGACTTATTAGAAAACTCCATGGACCAGTGTTCACCACTCTCAAAACATGACCATTCTCCCGAATCCAAAAAAGAAATAATTTCTGGCAGTGATCAGATTTTAAAGACTGAGATGGTAGCAATTAAGGCACATTCGGAAAGAGATGATTCAAATACTTCTAAATCCACAGCAACATTTCCAGTTGTCCAAGCCTTGTCAAACATAGTTGTCGAAAATGATGATTTTCATTCTAAACAAAAGAGCCATCCCCTAAGATTAAACAATATATTTGTCAAAAAACATAAAAAGCTAACAATCAAAAATTTTAAGCCATCAAGATTTGAGACAGACCCACGACCTTCGTCATCGACAAGTAAGTCTGAACAATACTTTAATCTGAATATTGAGAAGGTAGAAAATCATGAGGACGGAATTCAGCCTGAAACTTCTGTTCAAAAAATTGAAGTCTTAGAAAATGAGAAAGAATTTGATGCTGATACAGAAGAGCAATCAATGGATATTGAGCCGACTGCGCCATCAATGATCAGTCACTCCAATGGCTATTCAACCTCCATTGACTTGGTAATCAAGGAGGAAGTGAATTCCAACAATGAGTTCAGCAACGAAGCCGATAAGTCCGGACGTGACCTAGCCACCCTCGAGTCATTACGTCCGATCAATGTGATCACATATGGCAATATGGGCGCCGCAGATTTTGACGACGATTCCAACCACAGAGAACTTCTGGACTTAGAGACGGCTTCTAAAAACAAGCAATTTGTCAATATGATGAGTGATAACTATTTCGGTGATAATATTTACGCAGATTATTTTACACCTGATCGCGTAGAGAGTTTCGATTCAGGGAAAGGTTCGAATGTGGCAAAGGATAGGGAAGTGTATAATATTTGGGGAGAACCATCACAAAAAGAGAACGAGTTTGTCTTACCAAATTTTATTCACGAAAGTTACAAAATTGCTGAGAGCAATATGGATTATGATATTGGAGAAAATCAAAATATGAATCACATAGGACACGCTGATCGGGATAGTAAGGCTGACGTTTTACAAGAGACTAGGGAAGAGGAACCGCCGCTGAACATCTGTGCAGACGAGCGAATGCCCCCCCGAGGGGAACTCAGCGGACAAGAGAGCAATGGCGACATGGAGTCATCGTGGAGCGGGATGTACCCGGAGGTGACGGCCGCGGAGCCTTACGACCTGATGGCTCGTGAGAGCTGGGTCTCCGACGGCTCGGACGTCGACGACAACCACAAGACGGACAATTTGGAGGAGCCGTTGACGAAAGGGCGCCTCCACACGTGCGCCCAGTGCGGCCTCAAGTTCCCGACGCTGAAAGAATTACGATCTCATTGCAACGCCTCCTACTCCCACAGCCGCATCGCCCGCTGCATTAAGAGAGAGGAAAAACCGGACGTGCCTTCTTTAGCTGAAACTCTCATATTCGAAACCAAAGACGCGGTGGCCACCTCCATCCTGCCCGAATTCGATCCGCTGGCTGAGACCAAGCCGGAGCTGATCCTGATAAAGCAGAAGAAGAAACGGAACAACTTCGTGTGCTTCACGTGCAACGTGGACCAGGGCGGCCCCGAGGCCTTCAACGAGCACCTCAAGGTCCACCCGCTGGAGTGCTACACGTGCGGCAAGTTCTTCTACCGGCGAGCCAACCTAGTGTTGCACACGAAGACGCACCTCGGCATCAAAAATTACAAGTGCGAGGTGTGCGGCAAGCGCTTCGTGACGCGGCAGAAGCTGGGCGAGCATCGCAACACGCACACGGGGCAGGCGCCCGTCAAGTGCACGCTGTGCGACCAGACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGGGACCGACACCACCTGAAAAAGAAGGCCAAGGTGCGCGACTTCGTGTGCCGCTGCGGCGCCGTGTTCCACTCGCGGGCGAAGCTGCTGTGGCACCAGGAGACGCACGAGGATCGGCCCAAGGCCTGTCCGTACTGCGGAGACAAGTTCGTGCACGCGGCTTCGCTCACGCGCCACGTGCGGCGCTCGCACAACCACCTGTACGTGGCGAGGCGTTCGGGCCGCGACGAGAACGTGCCGTGCCCCGTGTGCAAGCAGGTGTACCTGCGCTCCAACCTGCGCGCGCACCTGCACACGCACAGCGGCAAGCGGCCCTTCGTGTGCGTCATGTGCGACAAGGCCTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACGCCAGCCGCTCGGCCAAGCCCTACAAGTGCACGCTGTGCAAGGGCGCCTTCTTCCGCCAGAGCGAGTACGCGGCGCACGTGAACGCGCATCGCTCGGTGCGGCCCTACACGTGCAAGCACTGCGGCCGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGACGGCCAAGCGCTACGCCTGCGAGGTGCCCGACTGCGGCAAGACCTTCCACCGCAGCTACTACCTCACGGAGCACATGCGCGTGCACAGCGGCGCCCGCCCCTTCGCCTGCAACGTCTGCGGCAAGACCTCGACCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGAGAGCCCATCGCCACCGAGGCCTAG
- Protein Sequence
- MLEDKMDEKVQCPVCTLYLHNGMSLETHLDTHPKDQVIKALCCLSSKGNASDSRTPTPSISERSYRSRTPVTDDSVRWSTSRRSAESTYWRRTPSRNKSLSSCNSRNDTPEARLNVTNFDSNAVNNCSEFSNCSVKSSKTSQSYLPSVPTIQSNYSQQYPFYSEPTEDPEIKYSRSSDYNVAENTNQLFVYNVPVLTSNVKVSTSPTLPTPSTSKKQSNYVKILPKQNMLLKNAARLGYIAPGLKPYPVMMSTSPTYMQKNVQTNMMVAGSVPVSGILDTKTAVAPLASQFTPLNSGNLTTGTTVVTQNSQIIYREMVHSIDGKPYISNIPHVLNTHENMGQSGSLYQNLMVVDPFGNTSCMYSTPQSILPKTCNSPIFSNNLSHIPTSIDKSIPNIVNDVSKTLIMEVSPIQHQMSSKTEVITMQQMDETMVSSPGQTESDTVHRALEPETDSKSSTSVSTKGLKILSNIKVEVPVQHNKNMINTIMDLTGPGDSGYIQCPQSPENILPDLKEKPQRRSDIDNCCQPSNDSNEKFTPHNFSVIKNVGNPQSCKDFPKLNSAQEDNESCDSNPVPDLICNEKPSISPCSDLLENSMDQCSPLSKHDHSPESKKEIISGSDQILKTEMVAIKAHSERDDSNTSKSTATFPVVQALSNIVVENDDFHSKQKSHPLRLNNIFVKKHKKLTIKNFKPSRFETDPRPSSSTSKSEQYFNLNIEKVENHEDGIQPETSVQKIEVLENEKEFDADTEEQSMDIEPTAPSMISHSNGYSTSIDLVIKEEVNSNNEFSNEADKSGRDLATLESLRPINVITYGNMGAADFDDDSNHRELLDLETASKNKQFVNMMSDNYFGDNIYADYFTPDRVESFDSGKGSNVAKDREVYNIWGEPSQKENEFVLPNFIHESYKIAESNMDYDIGENQNMNHIGHADRDSKADVLQETREEEPPLNICADERMPPRGELSGQESNGDMESSWSGMYPEVTAAEPYDLMARESWVSDGSDVDDNHKTDNLEEPLTKGRLHTCAQCGLKFPTLKELRSHCNASYSHSRIARCIKREEKPDVPSLAETLIFETKDAVATSILPEFDPLAETKPELILIKQKKKRNNFVCFTCNVDQGGPEAFNEHLKVHPLECYTCGKFFYRRANLVLHTKTHLGIKNYKCEVCGKRFVTRQKLGEHRNTHTGQAPVKCTLCDQTFRRYSNMVQHRDRHHLKKKAKVRDFVCRCGAVFHSRAKLLWHQETHEDRPKACPYCGDKFVHAASLTRHVRRSHNHLYVARRSGRDENVPCPVCKQVYLRSNLRAHLHTHSGKRPFVCVMCDKAFTTKWNLKLHRWTHASRSAKPYKCTLCKGAFFRQSEYAAHVNAHRSVRPYTCKHCGRQFIRKYNCQRHVREHETAKRYACEVPDCGKTFHRSYYLTEHMRVHSGARPFACNVCGKTSTNKSNHNKHVKIHHAREPIATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204282;
- 90% Identity
- iTF_01205140;
- 80% Identity
- -