Pbra015397.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- ZBTB11
- Assembly
- GCA_905147105.1
- Location
- LR989946.1:2649819-2653029[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.1e-05 0.0034 18.0 0.3 2 23 17 39 16 39 0.92 2 22 0.0018 0.15 12.8 0.6 2 21 54 73 53 74 0.92 3 22 0.0089 0.73 10.7 3.3 1 23 108 131 108 131 0.91 4 22 2.8 2.3e+02 2.8 0.0 2 23 159 181 158 181 0.89 5 22 1.5 1.2e+02 3.7 0.1 2 23 203 225 202 225 0.94 6 22 3.4e-06 0.00028 21.4 1.1 1 23 230 253 230 253 0.97 7 22 0.65 54 4.8 0.9 2 23 259 281 258 281 0.90 8 22 0.0016 0.13 13.0 1.2 1 23 318 340 318 340 0.95 9 22 0.0031 0.26 12.1 0.0 2 23 368 390 367 390 0.91 10 22 0.00017 0.014 16.1 1.2 2 23 411 433 410 433 0.96 11 22 0.0038 0.32 11.8 1.3 1 23 438 461 438 461 0.89 12 22 0.045 3.8 8.4 0.1 1 23 466 489 466 489 0.95 13 22 0.018 1.5 9.7 0.4 5 23 495 514 492 514 0.91 14 22 8 6.6e+02 1.4 2.7 2 21 521 540 520 541 0.85 15 22 0.0011 0.094 13.5 1.4 1 23 593 616 593 616 0.95 16 22 1.5 1.2e+02 3.7 0.0 2 23 644 666 643 666 0.91 17 22 4.3e-05 0.0036 18.0 1.9 1 23 715 738 715 738 0.93 18 22 0.067 5.5 7.9 4.9 2 23 743 765 742 765 0.90 19 22 0.00041 0.034 14.9 0.6 1 23 770 793 770 793 0.97 20 22 8.2e-06 0.00068 20.2 4.7 1 23 797 820 797 820 0.97 21 22 8e-05 0.0066 17.1 1.2 2 23 827 848 826 848 0.96 22 22 0.00042 0.035 14.8 2.5 1 23 854 876 854 876 0.98
Sequence Information
- Coding Sequence
- ATGAATGCAAACATACCCGATGAAGTTAAAGTTGATATTTCAGTAACAGTCTGTGAGAAATGCAATATTGTTTTTAAAAATTATGATAATCTCCGTCAACATTTGCTTGATGAGCACGCGTTTGTTGATTTTAACTTGAAGCCGGTTAAATTAACTTTAAGTTGCGACAACTGTAAGAAGGTTTTCACGTCTAAGTTAGGCTTGAAATATCATCTAAGTAGGTGCAAAGATTCCTCTAATAGAACGAAAGTGATTAAACAAAATATTGCTATTCTTCTAAACATGTCTACGGCTCTTCCTTTCAAATACTTTATGAATCGTTTTCGATGCTTTCACTGTTCTAAGGATTTTGTACAATTTGATTCTCTCAAAGAACATTCCGTGAAAGAGCATACGCATTGCGACTTGAAATCCAAATCTATGAAATTTCTTAAAGGACGTGATATTAGTTTGAAAATTGATATATCTAATTTGTCCTGCAAAGTGTGTTCAGCAAACTACACAGACGTACCGCCGCTTATTGATCACTTAATTGCTAATCATAAAGCGACCTATGACAAAACTGTAGAATATTTGCAATCGTTTAAAATTGAAAAGGATAGTATTCCATGTCCATTTTGCTCGGACGTGTTCCAGTATTTCAGAAAACTACTCGAGCATATTAATTTGTTACATTCTGTGGAGAATTTTGTTTGCTCTTACTGCGGTCAGACTTTCGGCAATAATTATAACTACCGGGCACACATATCGCGATACCACAGACAAGATAGTGTCAAGTGTATCGAGTGTTCCACTGAGTTTCCTACCGTCCACAAACTATCCCGTCACAAAGCCAGAGTACACGATGAAAATCCGGAAGGCCTAGAGCCTTATACGTCTGAGAAGAGAAGGAAAAACTTGCAAATACTCTTCAATAATACAACGATTATACCATTTAAATGGCGAGGAAAATATCTGTGTTTCTATTGTGCTAATGACTATACGGATTACTCAGATTTAAAGAAACACATGCAATCGCACGGCCAATGCACAACACGAGACTACTCGCTCAAAGCAATCAAAGGAAATAGTATAGAAATCAAATTAGACATATCGACTATTGAATGCGAAATTTGCAACGAACCATTTTCGAGTCGAAGTGAAATAGTCGATCATTTGATAGGAAAACACGAGTTGGATTACGATAAGACAATTGAAACGCCAATCTCAGAATTTCGGCTGGTGGATATGAAGTGCCAGTACTGTGAAAAGGATTTTTCTTACTTCGTCTATTTGAGGAGGCATTTGAAGCTTGCGCACTCGCAAAATAGTTTCGTCTGCGACGACTGTGGAGCCACGTTCAACAGTAAACGGGATTTGGCATTTCACCTCCACAATTTCCACAAATATGGAGGGTACCCGTGCGACGTGTGCGCAGATGTTTTCGATTCCAAGAACGCTTTGAAAAGTCACAAAAACCTAAATCATTTCAGAATGTGTATATACTGTAATGGTAACTTCGCGTCCTTTTCGTTGTTACAAAAGCATATCCGGAACGATCATTCCCAGTTTAAAAGTAATAAGTGTCCATTTTGTTCTAAGAAATGCCATTCAAAGCAAGGAGTCGGTCTGCACATAAAAAATTGTAAAATGAATATTCAACAAAAGACTCCAGCTATGCTGCCTTCGGAAAACGCTATAGAGCCCAAGAAAAAGCAAAATTTAACCCAAATTCGACGAAACATAATTAACGTGTTAAATATGACATCGGTAGTTCCATTTAAATTCTTTGGCAAGTTTTCCTGCTTTTATTGCTCCTTACGGTTCACGGACTTTGAGGATCTCAAACAGCATACGGCGTCCGAACATCCATTTTGCGATTTAAACACGTCCAGTATAAAAAAATGCAAAGGAGAACGGACAACTGTCAAAATTGACATTTCCTCCCTCTCGTGTAGAATTTGCAGTCAACCGGCTGAACAATTCGACGAACTGATCGATCATATTATAGCTAAACACAGTGCGTCTTACGATAAATCTGTTATTAGCTTTGAGCCATTTCGAATTTATATCGACAAATGTTCTTGCACGCATTGTTCCAGCGTGTTTCGATATTTTACAACTTTACTGCGACACTGCAACTCTGAGCATAGCAATACGTGCCACGTGTGTGATTCTTGCGGGAGGAGTTTTAAAAAGGTATCAAATTTAACAGCGCACATTGCGCATACGCATAAAGGCGCTTGCGAGTGTGCTATATGCGGTATTCAGTATAGGAACCAGTGGTGTTTGAACCGGCATAACGCTAAATGTCACAACGCGAAGGACTTCAAGTGTCCCAACTGCCCTGAGCAGTTTCAGTCGCCTTATCAAAGGCAGAAGCATCTGATAAAAGTTCATGATATAGGGCATAAGTGTAGCTACTGTGGTAGAATGTTTACGAGGAATTCGTTCATGAGGGATCACATTAGACGGACCCATTTGAAGGAGAAGAATATGGAATGTTCAATTTGTGGGGAGAAATTTTTTGATAATCATCTTTTGAAGCTTCATATGGTGAAACACGAGGGTGTTAGGAAGTTCAGTTGCGCTGTATGTTGTAAATCTTTCATGCGTCGTAGTAATTTGGCATCGCACATGAGCATGCATAAGAAATATGGGCATGTTAACGCTGAATAA
- Protein Sequence
- MNANIPDEVKVDISVTVCEKCNIVFKNYDNLRQHLLDEHAFVDFNLKPVKLTLSCDNCKKVFTSKLGLKYHLSRCKDSSNRTKVIKQNIAILLNMSTALPFKYFMNRFRCFHCSKDFVQFDSLKEHSVKEHTHCDLKSKSMKFLKGRDISLKIDISNLSCKVCSANYTDVPPLIDHLIANHKATYDKTVEYLQSFKIEKDSIPCPFCSDVFQYFRKLLEHINLLHSVENFVCSYCGQTFGNNYNYRAHISRYHRQDSVKCIECSTEFPTVHKLSRHKARVHDENPEGLEPYTSEKRRKNLQILFNNTTIIPFKWRGKYLCFYCANDYTDYSDLKKHMQSHGQCTTRDYSLKAIKGNSIEIKLDISTIECEICNEPFSSRSEIVDHLIGKHELDYDKTIETPISEFRLVDMKCQYCEKDFSYFVYLRRHLKLAHSQNSFVCDDCGATFNSKRDLAFHLHNFHKYGGYPCDVCADVFDSKNALKSHKNLNHFRMCIYCNGNFASFSLLQKHIRNDHSQFKSNKCPFCSKKCHSKQGVGLHIKNCKMNIQQKTPAMLPSENAIEPKKKQNLTQIRRNIINVLNMTSVVPFKFFGKFSCFYCSLRFTDFEDLKQHTASEHPFCDLNTSSIKKCKGERTTVKIDISSLSCRICSQPAEQFDELIDHIIAKHSASYDKSVISFEPFRIYIDKCSCTHCSSVFRYFTTLLRHCNSEHSNTCHVCDSCGRSFKKVSNLTAHIAHTHKGACECAICGIQYRNQWCLNRHNAKCHNAKDFKCPNCPEQFQSPYQRQKHLIKVHDIGHKCSYCGRMFTRNSFMRDHIRRTHLKEKNMECSICGEKFFDNHLLKLHMVKHEGVRKFSCAVCCKSFMRRSNLASHMSMHKKYGHVNAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206746;
- 90% Identity
- iTF_01205112;
- 80% Identity
- -