Pbra008940.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- retn_1
- Assembly
- GCA_905147105.1
- Location
- LR989942.1:560950-564643[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-19 2.6e-16 60.1 0.0 17 89 20 90 15 90 0.95 2 2 3.8 9.3e+03 -2.6 0.0 25 38 214 227 180 229 0.64
Sequence Information
- Coding Sequence
- ATGATAATCAAATGTCAATCGAGCGAGCAAGCTCCACTTTACGTTCTTACTTTCCCTGGAACGCCTATCAACAGATTACCGATAATGGCGAAGTCTGTGCTGGACCTGTATGAATTGTACAACTTGGTGATAGCTCGTGGTGGATTGGTGGAGGTGATCAACAAGAAACTCTGGCAGGAGATCATCAAGGGACTTCGTCTGCCATCGTCTATCACTTCGGCTGCATTTACACTGAGAACACAATATATGAAGTATTTATACGATTATGAGTGTGAGAAGAAAAACCTGTCCACACGCAGTGAGCTGGACGCAGCCATCGAGGGCAACAAGCGGGAGGGGCGCCGTGCCTCAGGACAGTACGACGCCCAGGCAGCACTCTCTATGCCCCCCCTGAATCGCGGAGTCCCGGCGTCCCTCGCGCAGCTGTCCCAGCACATGCAGCCCCTGTCCCTGTCCCTGGGGGGTACTGTGCCCCGCCTGCCCCCTCTGCCCCCACACGCCCCTCACATCTCGCAGCATGACATCGAGTACCGAGTCCGCGAGTACATGAAGATGATACAGCAGCAACGCGAGCTGATCAGAAATGGTTCTGAATCTCCTCCGGGGGCACCGATGATGTCTCCCCGCGACGCGTTGTCCGCCATTGACGTGTCACGTCTCACTCTGTGGTCTCTGTACAACAACAACAACAACAGCCCACAACCAGATATCGAACCGCAACGAGAGGCGTTGAACTTGAGCGAGAGCCCGAACTCCAGTAACGGCGGCATTAAACGCGAGGCTTGTCGCTCCCCCCCTCCGCCTGCCAAGCGTCGCACCCCGCGCCCCCCCTCGCCCGCGCCCCGCTCTCCTCCAGACACCAAGCCCATCGCGCACCTCAACGGCAACTCCGGCCTCAACAACGGCGTCAGTGGCGCCGCCTTCAAGATCTCCACTCGGGGTGACGCAAGCACAGGTGATCAAAAACTCGTCGTATCCATAGAGCTCAACGGTGTCACATACGAAGGTGTGCTCTTCCCCTCACAAAACGGTAACGGGCAAAACCACCGACAAATGGTTTCTTAA
- Protein Sequence
- MIIKCQSSEQAPLYVLTFPGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALSMPPLNRGVPASLAQLSQHMQPLSLSLGGTVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELIRNGSESPPGAPMMSPRDALSAIDVSRLTLWSLYNNNNNSPQPDIEPQREALNLSESPNSSNGGIKREACRSPPPPAKRRTPRPPSPAPRSPPDTKPIAHLNGNSGLNNGVSGAAFKISTRGDASTGDQKLVVSIELNGVTYEGVLFPSQNGNGQNHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00642129;
- 80% Identity
- iTF_01204655;