Pate016621.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- lola
- Assembly
- GCA_963170745.1
- Location
- OY720666.1:8735310-8740471[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-16 7.2e-13 48.4 0.0 2 42 374 415 373 418 0.94 2 2 4.9 5.6e+03 -2.4 0.1 29 36 458 465 458 471 0.80
Sequence Information
- Coding Sequence
- ATGTCGATGCAGCAATTTTGTCTACGATGGAATAATCATCAACCAAATTTCATATCGGTATTTTCAAActtattgaataatgaaacattGGTCGATGTTACGCTCGCTGCTGAAGGGAGACATCTTCAAGCACACAAAGTTGTATTATCTGCTTGTAGTACATACTTTCAATCTTTATTCACTGTTAATCCTTGCCAACATcctattgtcatattgaaAGACGTCAAGTTTTCAGACCTGAAAATTATGGTCGATTTTATGTATTACGGCGAGGTCAATGTTTCCCAAGACCAACTACCCTCCATCATTAAgaccgCTGAAAGTCTGAAGATAAAAGGTTTAGCTGAAATGCATACAGCCTCTGTGACAAAGTGGCCAAGCGGAGGAAGCGAGCCAGGCGGAGGAGATAGAGGCGAATCTTGTTCTCCGAGTCCCTCTCCATTGTCACCTTCACTGAGACGAAAAAGGCTAAGAAAAACATCCACCGGCTCTACCTCTGGATCTGGTGAAAAGTCAGAAGAAATTAACGAGATTACATTAGTTGCTACCAACGTTGTGAAACCTGAACCATCTATCATTACGCAAGACAGTGGCGAACATTTACGGAGACCTTTGAATGCCAGCAACGAGTCACAAGGGAGTATCGACGAAGACCAAATATCTATTATGAGTAATATGGAAAGTAGTTCTGCAACAACACCGGCACAAAGCGAGGGATCGATGCAAGATATGAGTCAGCAATCTGGAGCTAACGCCGCGCAGAGCTCAGTTGTAACTCAGCCACCAGCCCATCAAGGATTGCAATGGACAATAATGGAGCACACGTATCCACGTTTCGCATTGTCATCATGTCAAACGAATCTGTCGATCCAAGCGCCATCAGCTTTTACGACACCTGAAATAACAACGCCGCCTCCAGTAAGTGGTCAGTATTCGACTACAAGCACGACTGCATCTAGCTGCGCTATGACCAACTATTCAAACTCTTCTCATTCAACGGTACAACACTCCTCCTCAGGCGGGACAACGCCACCGGCGCCTTGCACAACAAACTGCCAAAGTCCATGCGCTAGCCCACAAACAgcgaataaaagaaaaagatctaCAAATCCACAAgctgatgaaaattttattagAGCTTTAGACGCGGTACGATACGGCGGTATCGGTTTTTGCAAAGCCGCGCGTATGTTTGGTGTTAACAATCGAACTCTTTGGCTGGAATATAAGAAACGCGGATATCCAAATAACAGACCGAGTGTTAAATCCAGGGTCAAACAAGAAGTTAATACTTCGCCACCTCCGCCGCCGGCTCAAATCGCTCAGCCAATCAATTCTCAGAGCCCTTCGCCAATGGGACCTCCATCTACGCCACACAGTACTCTGAACGCTCATACTACACATACTATGCATATGGCGCATACCCCGCACACGATGCTGAGCGGTTATTTAGATAACAGACATAGCGATTTTGCGCTCCAGAGTACAGCTATGCCCATCAATTTGCACGGCGTTAATTATAATTCTATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASVTKWPSGGSEPGGGDRGESCSPSPSPLSPSLRRKRLRKTSTGSTSGSGEKSEEINEITLVATNVVKPEPSIITQDSGEHLRRPLNASNESQGSIDEDQISIMSNMESSSATTPAQSEGSMQDMSQQSGANAAQSSVVTQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQAPSAFTTPEITTPPPVSGQYSTTSTTASSCAMTNYSNSSHSTVQHSSSGGTTPPAPCTTNCQSPCASPQTANKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSVKSRVKQEVNTSPPPPPAQIAQPINSQSPSPMGPPSTPHSTLNAHTTHTMHMAHTPHTMLSGYLDNRHSDFALQSTAMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00719318;
- 90% Identity
- iTF_00938591;
- 80% Identity
- iTF_01200309;