Pvar006980.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001014415.1
- Location
- JXPM01015511.1:8336-14512[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.17 3.1e+03 -2.9 2.9 35 83 40 85 10 114 0.55 2 4 0.28 4.9e+03 -3.5 3.2 65 91 125 151 73 193 0.54 3 4 3.2e-111 5.6e-107 357.5 30.3 1 299 295 592 295 593 0.89 4 4 0.063 1.1e+03 -1.4 4.0 216 245 618 646 596 667 0.50
Sequence Information
- Coding Sequence
- ATGGACACAACAAGTGCAGCTGGTCGGCGACGGAGCAATACACGCGTGAATGCTGAAGATAATGCACTGGATCAAATAACCAAGGAGCGTGGTAAAGACAGATCAGACATAAAGCCATCAAATTCGGCAGtaaaaaagagtgaaaagaACAATAATGTTAGAAATAcgacgaaaacaaaagcagcaaaagaaacCGAAATTTCTGCTGCAACAACGATAAGATCAAACGGCGATGAAGTCATCGAAGAAACGAAGAATATCAATGATAATAGCGGCTTTCTAGAACGCAACGATGCAAAAGCTTTTAAAGCGTCAACAATAACGGCGACGACAAATGCAAACGTTctacaagaagaagcaacttTCGaaaaggcagcaacaacaataaccgaGTCAACTGATAAAAGCGATATTCCcgatgaaacaacaacacttaatgATTTCACAACAAAAGCTATGAAAGACAACGAAAACGAAGAAGACGACGTCGATGgtgacaaagacaaagagaggagtaatgaagaaaataaagctGAGTTGAATGTTGACCCTCTTACTGTTATTGATAACAAAAGCAAGGAACCGCGACATTCTCTgacagaaaatttaaatttaacttcaTCCGAGTCTATGGAAAAGGATGAGCCACAATTGCCATATTGCCCTATGACGCCACGATCTATGATCGATACTAACGAACATGAAGGTGATCCATTTTATATGGATGAGAAAAAgtacaatagcaaaaatatacaaaaacaacaagctgcTGATACagctgacaatgatgatgtggCGGATTCTAATGAAGAGGATGACAATTATGGTGATCAACCTGAGGAAGAACTCTTAGTACAATTCTTAGGAGAAGCAAATCGCATTGCCGAAGCGCGTCTGGCGGCTCGAAGGCAAGCGCGTGCCGAGGCGCGGGAAATTCGCATGCGTGAATTGGAGCGCCAACAGAAGGAGCAAGAACAGAATGCAGACCGTGTATTTGATATGCACAATGTCGGCGCATCGACGAGCAGTGACACGCTGGCCCGAACACGTTTGGCAAGCGGATTGAACGTCGGCGGTTTACTGAATGCGACGCGCGTTGTCAGCGCAAGTTCGATGTCGTCGCGTCGAAGTAGCGAAGACTCGCTCGAAGAAGAGGGCCGTAGTCTGAGAGATATTAGATACGAATTAAAGGATGTTGAGGAACGATTTCGTAAAGCGATGATCGCCAATGCTCAGCTGGATAATGACCGCGCATCACAAACGtttgaaatgaaacttttgaaAGACAAAATCGAAACAATGCATGAATCGTATGCGCAACTTGAGCGAGAATTCAAAGATAAATCACGTGATTATAATGCGCTTAAGCGAAATCTCGATCGGCTGACGTTAGAGTTGAAGTTGGTGCAAGGTCAGCTGAACGAACGGGACACGCTCATTGCGGAACAAGGTCTTGTGATTGTCGCCGTCGAGAATGCCGATGGCACAGATGCCAAGCGTGCTCTAGTCAACGTCGAAAACGCAAATGTTCTCGCCTCGGTGCAAGGTTCGTTAGatGTAAGACTTAAAAAGTTTAACGaagagaaacaacaacttgtcAGCGAGGTACAGAAACTACAAGAGCAATTGGAGACATTCAAGAGCGAGGGCAAAGGACGCGGCAATTCGATGAATGGCCCACTGGCCTCTGATGAAGATTATGAGGCTCAAAgagaagcaaacaaaattatatcaGACTACAAATACAAGTTGCAGAAGGCTGAACAGGAAATCGCTAGTCTTCAGGCGAGCTTAGCACGTTCAGAGACCCAGGTCATACGATATAAAAGTACGGCGGAAGCAGCTGAAAAGGCTGAGGCTGAACTGAAGGTTGAGCGTCGAAAACTGCAACGAGAGaATCGCGAAACGATGGAACGACTCGAAGAATTAGAAACATCAAATAATCATCTACTAAAACGCCTGGATAAATTAAAGAATGCAAAGAGCGCGTTACTTAAGGATCTCTGA
- Protein Sequence
- MDTTSAAGRRRSNTRVNAEDNALDQITKERGKDRSDIKPSNSAVKKSEKNNNVRNTTKTKAAKETEISAATTIRSNGDEVIEETKNINDNSGFLERNDAKAFKASTITATTNANVLQEEATFEKAATTITESTDKSDIPDETTTLNDFTTKAMKDNENEEDDVDGDKDKERSNEENKAELNVDPLTVIDNKSKEPRHSLTENLNLTSSESMEKDEPQLPYCPMTPRSMIDTNEHEGDPFYMDEKKYNSKNIQKQQAADTADNDDVADSNEEDDNYGDQPEEELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVGASTSSDTLARTRLASGLNVGGLLNATRVVSASSMSSRRSSEDSLEEEGRSLRDIRYELKDVEERFRKAMIANAQLDNDRASQTFEMKLLKDKIETMHESYAQLEREFKDKSRDYNALKRNLDRLTLELKLVQGQLNERDTLIAEQGLVIVAVENADGTDAKRALVNVENANVLASVQGSLDVRLKKFNEEKQQLVSEVQKLQEQLETFKSEGKGRGNSMNGPLASDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENRETMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195262;
- 90% Identity
- iTF_01195262;
- 80% Identity
- -