Poka003236.2
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_034638295.1
- Location
- CM067848.1:40529691-40533384[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 2.3e+04 -9.9 11.4 87 87 89 89 10 207 0.58 2 2 5.8e-111 6.7e-107 357.6 30.3 1 299 295 592 295 593 0.89
Sequence Information
- Coding Sequence
- ATGGACACAACAAGTGCAGCTGGTCGGCGACGGAGCAATACACGCGTGAATGCTGAAGATAATGCACTAGATCAAATAACCAAGGAGCGTGGTAAAGACAGATCGGACATAAAGCCATCAAGTTCGGCAGTAAAAAAGAGTGAAAAGAACAATAATGTTAGAAATACGAcgaaaacaaaagcagcaaaagaaACCGAAATTTCTGCTGCAACGACGATAAGATCAAACGGCGATGAAGTCATCGAAGAAACGAAGAATATCAATGATAATAGCGGCTTTCTAGAACGCAACGATGCAAAAGCTTTTAAAGCGTCAACAATAACGGCGACGACAAATGCAAACGTTCTacaagaagaagcaacttTCGAaaaggcagcaacaacaataaccgaGTCAACTGATAAAAGCGATATTCCcgatgaaacaacaacacttaatGATTTCGCAACAAAAGCTATGAAAGACaacgaaaacgaagaagacgACGTCGATGGTGACAAAGACAAAGAGAGGAGTaatgaagaaaataaagcTGAGTTGAATGTTGATCCTCTTACTGTTATTGATAACAAAAGCAAGGAACCGCGACATTCTCTGACagaaaacttaaatttaactTCATCCGAGTCTATGGAACAGGATGAGTCACAATTGCCATATTGCCCTATGACGCCACGATCTATGATCGATACTAACGAACATGAAGGTGATCCATTTTATATGGATGAGAAAAAGTACAAtagcaaaaatatacaaaaacggCAAGCTGTTGATGCAgctgacaatgatgatgtgGCGGATTCTAATGAAGAGGATGACAATTATGGTGATCAACCTGAGGAAGAACTCTTAGTACAATTCTTAGGGGAAGCAAATCGCATTGCCGAAGCGCGTCTGGCGGCTCGAAGGCAAGCGCGTGCCGAGGCGCGGGAAATTCGCATGCGTGAATTGGAGCGCCAACAGAAGGAGCAAGAACAGAATGCAGACCGTGTATTTGATATGCACAATGTCGGCGCATCGACGAGCAGTGACACGCTGGCCCGAACACGTTTGGCAAGCGGATTAAACGTCGGCGGTTTACTAAATGCGACGCGCGTTGTCAGCGCAAGTTCGATGTCGTCGCGTCGAAGTAGCGAAGACTCGCTCGAAGAAGAGGGCCGTAGTCTGAGAGATATTAGATACGAATTAAAGgatGTTGAGGAACGATTTCGCAAAGCGATGATCGCCAATGCTCAGCTGGATAATGACCGCGCATCACAGACGTTTGAAATGAAACTGTTGAAAGACAAAATCGAAACAATGCATGAATCGTATGCGCAACTTGAGCGAGAATTCAAAGATAAGTCACGTGATTATAATGCGCTTAAGCGAAATCTCGATCGGCTGACGTTAGAGTTGAAGTTGGTGCAAGGTCAGCTGAACGAACGGGACACGCTCATTGCGGAACAAGGTCTTGTGATTGTCGCCGTCGAGAATGCCGATGGCACAGATGCCAAGCGTGCTCTAGTCAACGTCGAAAACGCAAATGTTCTCGCCTCGGTGCAAGGATCGTTAGATGTAAGACTTAAAAAGTTTAACGAAGAGAAACAACAACTTGTCAGCGAGGTACAGAAACTACAAGAGCAATTGGAGACATTCAAGAGCGAGGGCAAAGGACGCGGCAATTCAATGAATGGCCCACTGGCCTCTGATGAAGATTATGAGGCTCAAAgagaagcaaacaaaattatatcaGACTACAAATACAAGTTGCAGAAGGCTGAACAGGAAATCGCTAGTCTTCAGGCGAGCTTAGCACGTTCAGAGACCCAGGTCATACGATATAAAAGTACGGCGGAAGCAGCTGAAAAGGCTGAGGCTGAACTGAAGGTTGAGCGCCGAAAACTGCAACGAGAGGATTTATTAGTTATAAACTTTTGGGATGAGTGTCATTGTCAATAG
- Protein Sequence
- MDTTSAAGRRRSNTRVNAEDNALDQITKERGKDRSDIKPSSSAVKKSEKNNNVRNTTKTKAAKETEISAATTIRSNGDEVIEETKNINDNSGFLERNDAKAFKASTITATTNANVLQEEATFEKAATTITESTDKSDIPDETTTLNDFATKAMKDNENEEDDVDGDKDKERSNEENKAELNVDPLTVIDNKSKEPRHSLTENLNLTSSESMEQDESQLPYCPMTPRSMIDTNEHEGDPFYMDEKKYNSKNIQKRQAVDAADNDDVADSNEEDDNYGDQPEEELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVGASTSSDTLARTRLASGLNVGGLLNATRVVSASSMSSRRSSEDSLEEEGRSLRDIRYELKDVEERFRKAMIANAQLDNDRASQTFEMKLLKDKIETMHESYAQLEREFKDKSRDYNALKRNLDRLTLELKLVQGQLNERDTLIAEQGLVIVAVENADGTDAKRALVNVENANVLASVQGSLDVRLKKFNEEKQQLVSEVQKLQEQLETFKSEGKGRGNSMNGPLASDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREDLLVINFWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195988;
- 90% Identity
- iTF_01195988;
- 80% Identity
- -