Preg014920.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01166565.1:11592-19985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 11 7.7 0.7 1 23 1722 1745 1722 1745 0.91 2 12 2 2.1e+02 3.7 1.0 1 23 1903 1925 1903 1925 0.93 3 12 0.00076 0.08 14.4 2.8 2 23 1928 1949 1928 1949 0.97 4 12 3.7e-05 0.0039 18.6 0.2 3 23 1957 1977 1955 1977 0.98 5 12 7.5e-06 0.00079 20.7 5.8 2 23 1984 2005 1983 2005 0.97 6 12 8.5 9e+02 1.7 0.1 5 23 2018 2036 2017 2036 0.96 7 12 0.037 3.9 9.1 0.1 2 23 2075 2095 2074 2095 0.96 8 12 8.9e-05 0.0094 17.4 0.4 1 19 2101 2119 2101 2123 0.95 9 12 5.1e-06 0.00054 21.3 1.8 1 23 2131 2153 2131 2153 0.99 10 12 0.00018 0.019 16.4 6.5 1 23 2159 2181 2159 2182 0.96 11 12 0.0011 0.11 13.9 6.4 1 23 2187 2209 2187 2209 0.99 12 12 0.0027 0.29 12.7 6.0 1 23 2215 2237 2215 2238 0.96
Sequence Information
- Coding Sequence
- atgacTGAAAACGTTCAGTGTCCAGTATGTACTCTATACCTGCATGCAGGTATGAGTCTTTCGGATCACTTGGAAACACATCCGAAAGAACAAGTGATTCGAGCTTTAGTACAAATGACCATATCTGGCAATGGAATTGGAGGTAACAATACTTTGGCCTCTGTTTTAGCTGGAGAAAATAGCAGTATAGGCAATGGGAGCAAAAAATCAACTAACAACGATTTGGATGAGAAACCTTTGCCAAACCACAAAGATAATGAGCTTAATATTAGCAGTGCTGGTAATAGTTGTAGTGCTAGTTCAAGTAATTCTGCTAGCAATTGTTCAGTGTCAAACCAAAGTGTTAGTAGTAGCCAAAATTCtaataacatattaaatttttccgcTACCAAAATCGAAGGACAAAATGAAACAGAAATCGATAAAACACCAATAACTCCATCAAAATTGGTGGTTAAAACAGAAACGAAGACAATGACAAAAGACAATGCCGCTGCTAATGAAAATGCGAATACCTGCTTttctaaacataatttcaatcaaacCAATTCCACAAATTCTTCAAACTCTACAACAAGTGCAAGTCAATCATATCAGCCAAACTCGATTGAATTGACAAATGCCCCAAATATTCATAATAGTTTTAACGTATTTGGCGGTAATTCTCGATATGAGCAACAACAGCGTAATGGCGTTAATAATCAAAATCAACTGTCTACACCACAACATATGCCACCACCGCCAGCACCAGTAACAGTAACAGCAACGGCGCAAAGTCAACACCCTGTACAACATCCAGATGTAGGAAGAGGAGTAATACCAGCGGCCTCAAATCCGACATTTCATTCGTTGCAGACACAACAACTGCCGCCACCACCCCCACCGCATCATACGTCGTCCCATTTAGGCAATACATCAAGTAGCCATCGACAGACTCACATGTTTGCAACAGGACAACATCATCAACAAGCGCCAACGTCAAATTCTCATCATCAACAAAGTTTAAAGGTTATATATACACCCAATTTGCCACCCCCGCCTCCGCTGCAGCTTTTCACGTATCAACCACAAACACATTTGCAACATCATCAGAAACCCCCACCGGCCTATGGCACTGCAATTAGTCAAATACGATCTCAACATAATCAAAATAAGAATCAAGTGACAGGGTCATTGGCAACGCAACACCAAAATCAATCATTGCCAGCACATTCaattttacaacaacaacaacagcatcatcATTTGCAGCAACAGCAAACAATGCAACACAATTTAAGAATTGATGTACCACCGCCACCACCGCTACCAATTACAACAAAACATTCATTTAACCCAAAAAACAATAGTTTGTCAATTCAACATCATCCAACgatgacaacaacaacaccagcaTCATCTAGACATAGCCAAACCCAACAACATCTCCAACATCAGCAAATGCCTAAAACAGATTTGTCCCACCAtcatcaacaacagcagcagaaACAGCAGCAACACCAACAGAATCAACAGGGAGAAAATCAACTACATCATGCTAACTCTGATAATACACGCCAAAATTCCCATAATcagatttttaattcaaatgaaaatccAAATAAATCCCCAAAAGTAACATCAATATCGAGTAtgcaaaattcaaataataataatactccATCATATCCACAAGTTTCGATTAGTCCATCTTCTGCCTCGGCATCAATAGCTGCGGTAGCAGCTTCAACATTGGGAAGACACACAAATTCACCATTTGCTGCTTTATTAGCAGCGGCTGCCGGAGCTCCATCACCTTCTAATGCATCGTCAGTTTTGCGGTATGCAGAGTCGCCTGTAGCACATTATTTAGAGCGTGAAAATGGCGATTTTATTGTACAAGAGACTCCCAAACATATTGTTGAATGTGTTGAAACCGACAATGGAGAATTTTCCGTCATTGAACGTATATACCAATCACCACCCAGTGTTTTACACATTCATGACGATGAAGATGATGAAGACGACGACGATAATAATACCGACAATCGTGGAGGTCAGCCTGAGAAAGAAAAGCGTGAAAGTAACGTTGAAAGTAAGTCAAAACAATGTGAAAATGACGGTgataaaataaaagatgaaaCGGGAGAAAAGCaaaggaaaaagaaaactttttcaaaagatGATAATAAAATGTCTTCTGAAACGAATAAGTATGATAATAGGAAGTCAAAGGATAATGAAGAAACGTCTGGTGATAATGATATTGTGGACTTTGTCAGCATTTCGAGTGACAGCGGCGACGAAGAGGAATTCATATCACAAGAACAAAAGGATCATCAAAATGCCACCTCCATATTAACAACAGCAACTACATCAACAATATCCACAACGACATCAACAACTGTATCGTCATCTATAACAACAACAAGTGGTGGTGGTGATATTCAACCATCACCATCTACATTATCATCTTCATTGCAATCTTCTTCGTCTACTTCATCTTCCAAATCGTCGAAAAACACAATCACCGTTCTAAGTGACGTTCAATTAaacttaaatgaatatttagatTTGGTGGGTAACATAATTGCCTCGAGCAAAGTAGCGGCGGCTCAAcgtaaaacatttgcaactatAGCTCCTATACCTTTGGTGAAAATTGAAAAGGAGGAACCTATGGATGAATACATAACATCAAAcccaacaacatcaacaacagttccaataacaaaaactaattttgaaacTCCACCACCAACAACACCTTTAAAGGCCAACAAACATGAGACTGAAGAAATAACTGATACCCCTAATATTAGTAATAATAgacaaacaataaataataatcataatgtAACTTTAACAAATGATATAGAACATGAcgaaaaagaagagaaaaaaccTCAGGTCTTTGGAAATGCATCGGAAAATGAAAACTCATCTACAAATGCTATTTCGAACACTTCTTCTAATCTTATGACTACGAATTCCAGTCATGTTACCAGTGTTATACGTATGGCCACAACTAGTCAACACCAAGCCCAACAAACAACAACCCAACAACTGCAGCAGCTGAATTCTttggaaaacaataaaaattctacTGAAGCTGAGGATCTCTCACAACCACAACGTAAAGTTCAATCTATGGCAAATGTGAAATCTTTAAGCCACCAGGCACCATTGGCTCGCAAAGGTCCTAAAAAATTAGTCATTAAGCCAAAAACTTCAAAGACTGAAGTTTTGCCCAGCACAAATACCGAAAATAATCCAAACCAATTAGATAACGTTCAAGAAATGCCTACAACTTCGGCTAAGGCTAGACAAgaatatacaaaacaaacatcTGCCGAGGAAGATACGTTAAATGCCACcgatataaaagttaaaaatgaaCCCATTACTTCTGTAACATATGAaaatcaacaacagcaacaacaaaacccTCCGTATCAACCAACTGCAACCTTCAGTATCTTGGAACAACATCTCAATTCTAAAGAACCTATACTAGAGTTTAAAGAGGAAAAACCTTGCATACAAGAAGCTAGTGTACCACCAACATCAATcataaaagaaatgaaagtgGAAAATAATGTTAACGATGATGCTCGTGTACTTTATGATTTTGCAAATTCGAAAAAGTCACAAAACGAAACACCATCAACTACTTTCCCTTCTTCCACATCCTTATTCTCCAGTAAACAAACTTCATTGGAAACAACATCAGCTGAAGAGgtacagcaacagcagcaactaAATAAGAACTTAAATCATGAACATGATACAACGTCTTCAACTTCATCAACATATTCTTCACAATCGGCTATGGATGCTACCATACCATCTGAGGATCATAATGAAAATTCAGCCACAGCAAATGCGCCAACTCAACATCAATCCAATCAGATGTATACCGATTTTCATTTCAACTATTTGTACAATAATGGTGGAAGTAACGTGACTGCAGTTCCTTCTGAACAAGTAGACATAAAAAACACCCAagaatttacaacattttatcaaaattctggaaataataacaataacatgtTATTGGAAGACTCATCATCCAGCAAACACTATACAGACTATCAACAACATAataatcaacatcatcatcagcagcacttacaacaacatcatcaatCGGCTGGAACATCACACCACCAATGGTTTAATAACAGTAATAATTATCAAACTTCTGAACCCACTATTACACCAATAACTTCAAATCATTCAGTATCTAACATGAACAGTGCTTTGTCCGTTGATGGCAATAGCGCTGCTTTGGATGGCACTGAAGTTagtaaatatttagatttagatTCCTGTAAACGTGAGCAAAACATTGATTTAATTGTTGGTGATCGTGTTACTGTACCACCACCTCCGCCACCATCTTCCTCAACATCGTGTTCCTTTAATGGTGCAACAGACAATAGTATGGCTGGTATCTGCTCAACGGCAGTTACTCTTAATATACGAACTGATGAGAAAATGCCAGCAAAAGGTGAAATCTCCGAACAGGAAAGTAATTGCGATATAGATAACTCATGGAGTCAACCGATGTATGGCGACATTTCTGCTCGTTTCTTTAAGACAACATTTCCCGGTATGTTTCCACAAGACAATGGCTGGAATAATGAGGAATATTTTACTGTACAGGATTTGAGTGCCTCAACAACTGCACAAGCAACGAACAGTGTTAGCAGTAGATTGAAAAGTTTCGAGCCTTTAAATAGCAGCAgtagcaacaataataacagtAATGGAATGCAAATGTTTTCTCAAAATTCCAATGATAATTGTAATATTGATGTAATGCCATCAACATCAGCAAAAATACGTAAAAGGCGTAAACGCAGTTCTCAAGATGGCAAAGCGTCACAAACGAATGGTAAGCGCATGCAGCCAACATCGACAGTTACGTCACAACAAATGATGATGCACCAACAAAATGAGATAACAGGGGTTGAATTTAATTTCCAACATCAACAACTGCAACATGAAACTCATTTACAGACACAACAACAATTGCAAGAACCCAGTACTTCGTCAGCATTTTTGGCCGGACCATCAAATGCTGGTACTGCCTTCATGCTACAACAACAGCACCCGCAACAGCAACAAATACAgcctcaacaacaacaaacacaacaGAGGCAACGCACAAAGGTTTATGAATGCGGTCATTGTAATGCCAAATATTCTAAACTTAAAGATCGTAATGCTCATATGGTTGATGTTCACAACTATATACGACAAAATCGAAGACTGGTATGTCCTACAACTGGTCTTGCCACACCCCTAACGAATTCAGATATGCAAGATGTTGCAATACCCACAACAAGTGCAGCTGGTAGCATGTTAATGCCCCCACTACAAAATGCCGATTGTATGGGTGATTACAAACAAGGCAttgtaaaaatagaaaatgaaaatatccaACGTGACCTATCAGGTGCAGAACCAATCAATGCTAATTTAAGTGCTAAAACAGAATTTATAGAAGACGATAAACATAATTTAGCCCTAGTACCAAGCGAAATCAATCTTGAGTGTGATACCAAACCACCAAACAATAATTTGCCATTGTCCTTGACAACACCCACTAGTAAATTAACAACACTCTATCGTATGTTAGTATCCTTTAATATGACAACATTGAAACAAAACCAAAGTCTTTCTGAATTCGATGAGAATCTTATAAAATCATCGATATTCTTCTGTTATATATGTcgacaaaatttcaattcagtCAAATTGTATGATGCACATTTGACCGAACATCCGGCTGAATGCTTTACGTGTGGTAAAAAATTTCAACGttggaaaaatttttcgttGCATTTAAAACGTCATTTGGGTTGGAAAGAATTCGGATGTACGGTATGCGATAAGAAATTTGTTGTACGAAGTGCTCTGGTTGAACATATGCGTATGCATTCCGGTCTATCGCCATTGAAATGTAAAGTTTGTGGCAAACACTTTAAACGATATTCAAACTTAACTCAACATCGTAAGCGTcatacaaaacaaattgttcGTAGGAAAGAATACGTTTGTTATTGTGGCGAAGTTCTACCATCTAAAGCACGCTTCTTGTGGCATAAGGAAACCCATGATTCCAAACCAAAATGTTGTCCTCATTGTTGTGATCGTTTTGTACATGTCAACTCTCTGCGTCGTCACATACGTCTCGCCCATTCAGATAAATTCGATTATACCGAACCAATGGAGTGTCCCATCTGCAAGCAGATCTTTGCTAAAGCTTCTATGAAAGCTCATATGGCAACACATTCAACAGAAACTCAATATGATTGTGCTATTTGCAATAAGTCTTTTTCAACAAAATGGAATTTAAAGATACATTCATGGGTACATGCAAATCGCACCGCCAAACCATTTAAATGTGAACACTGCCCCAAGGCATTCGTGCGTGAGGTCGATTTTAAGAATCACATGAATTctcataaacaaattaaaccGTATACCTGTGAAGTGTGTGGTTGCAAGTTTATTcgaaaatacaattatatgcGCCATAGACGAGAGCATCATGGCAACAAAAAGTATACCTGTGATCTATGTAAAAAGTCGTTCCATCGCCACTACTATCTAATAGAGCATAGACGCATACATACCGGCGAACGACCTTTTCAATGTACGATTTGTGGTAAAAGTTCAACAACTAAAACTAATCATAACAAACACCTTAAGATACATCATTCAAGAGATCCTTTTACAGTGGAAGTATAA
- Protein Sequence
- MTENVQCPVCTLYLHAGMSLSDHLETHPKEQVIRALVQMTISGNGIGGNNTLASVLAGENSSIGNGSKKSTNNDLDEKPLPNHKDNELNISSAGNSCSASSSNSASNCSVSNQSVSSSQNSNNILNFSATKIEGQNETEIDKTPITPSKLVVKTETKTMTKDNAAANENANTCFSKHNFNQTNSTNSSNSTTSASQSYQPNSIELTNAPNIHNSFNVFGGNSRYEQQQRNGVNNQNQLSTPQHMPPPPAPVTVTATAQSQHPVQHPDVGRGVIPAASNPTFHSLQTQQLPPPPPPHHTSSHLGNTSSSHRQTHMFATGQHHQQAPTSNSHHQQSLKVIYTPNLPPPPPLQLFTYQPQTHLQHHQKPPPAYGTAISQIRSQHNQNKNQVTGSLATQHQNQSLPAHSILQQQQQHHHLQQQQTMQHNLRIDVPPPPPLPITTKHSFNPKNNSLSIQHHPTMTTTTPASSRHSQTQQHLQHQQMPKTDLSHHHQQQQQKQQQHQQNQQGENQLHHANSDNTRQNSHNQIFNSNENPNKSPKVTSISSMQNSNNNNTPSYPQVSISPSSASASIAAVAASTLGRHTNSPFAALLAAAAGAPSPSNASSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDNGEFSVIERIYQSPPSVLHIHDDEDDEDDDDNNTDNRGGQPEKEKRESNVESKSKQCENDGDKIKDETGEKQRKKKTFSKDDNKMSSETNKYDNRKSKDNEETSGDNDIVDFVSISSDSGDEEEFISQEQKDHQNATSILTTATTSTISTTTSTTVSSSITTTSGGGDIQPSPSTLSSSLQSSSSTSSSKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKVAAAQRKTFATIAPIPLVKIEKEEPMDEYITSNPTTSTTVPITKTNFETPPPTTPLKANKHETEEITDTPNISNNRQTINNNHNVTLTNDIEHDEKEEKKPQVFGNASENENSSTNAISNTSSNLMTTNSSHVTSVIRMATTSQHQAQQTTTQQLQQLNSLENNKNSTEAEDLSQPQRKVQSMANVKSLSHQAPLARKGPKKLVIKPKTSKTEVLPSTNTENNPNQLDNVQEMPTTSAKARQEYTKQTSAEEDTLNATDIKVKNEPITSVTYENQQQQQQNPPYQPTATFSILEQHLNSKEPILEFKEEKPCIQEASVPPTSIIKEMKVENNVNDDARVLYDFANSKKSQNETPSTTFPSSTSLFSSKQTSLETTSAEEVQQQQQLNKNLNHEHDTTSSTSSTYSSQSAMDATIPSEDHNENSATANAPTQHQSNQMYTDFHFNYLYNNGGSNVTAVPSEQVDIKNTQEFTTFYQNSGNNNNNMLLEDSSSSKHYTDYQQHNNQHHHQQHLQQHHQSAGTSHHQWFNNSNNYQTSEPTITPITSNHSVSNMNSALSVDGNSAALDGTEVSKYLDLDSCKREQNIDLIVGDRVTVPPPPPPSSSTSCSFNGATDNSMAGICSTAVTLNIRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTTFPGMFPQDNGWNNEEYFTVQDLSASTTAQATNSVSSRLKSFEPLNSSSSNNNNSNGMQMFSQNSNDNCNIDVMPSTSAKIRKRRKRSSQDGKASQTNGKRMQPTSTVTSQQMMMHQQNEITGVEFNFQHQQLQHETHLQTQQQLQEPSTSSAFLAGPSNAGTAFMLQQQHPQQQQIQPQQQQTQQRQRTKVYECGHCNAKYSKLKDRNAHMVDVHNYIRQNRRLVCPTTGLATPLTNSDMQDVAIPTTSAAGSMLMPPLQNADCMGDYKQGIVKIENENIQRDLSGAEPINANLSAKTEFIEDDKHNLALVPSEINLECDTKPPNNNLPLSLTTPTSKLTTLYRMLVSFNMTTLKQNQSLSEFDENLIKSSIFFCYICRQNFNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQIVRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECPICKQIFAKASMKAHMATHSTETQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259553; iTF_01261357;
- 90% Identity
- -
- 80% Identity
- -