Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01166405.1:19541-26394[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.23 25 6.6 1.2 1 23 242 265 242 265 0.90

2 25 2.3e-05 0.0024 19.2 1.1 1 23 271 294 271 294 0.97

3 25 0.00017 0.018 16.5 1.8 2 23 324 345 323 345 0.96

4 25 0.039 4.1 9.0 3.9 1 23 425 447 425 448 0.95

5 25 0.24 25 6.6 0.6 2 23 456 477 455 477 0.97

6 25 0.0021 0.22 13.0 1.4 2 23 522 543 521 543 0.97

7 25 0.019 2 10.0 0.8 2 20 556 574 555 577 0.94

8 25 0.0011 0.12 13.9 5.6 1 23 659 681 659 682 0.95

9 25 0.0011 0.12 13.9 0.4 1 21 689 709 689 710 0.95

10 25 0.027 2.9 9.5 1.2 1 23 721 744 721 744 0.94

11 25 0.00035 0.037 15.5 0.4 2 23 759 780 758 780 0.97

12 25 1.3e-06 0.00013 23.2 1.7 1 23 786 808 786 808 0.98

13 25 9.5 1e+03 1.5 2.0 3 23 841 861 839 861 0.79

14 25 0.015 1.6 10.3 2.3 1 23 937 961 937 961 0.97

15 25 0.0048 0.51 11.9 3.7 1 23 1031 1054 1031 1054 0.94

16 25 0.02 2.1 9.9 2.3 1 23 1061 1083 1061 1083 0.95

17 25 0.0022 0.23 13.0 0.1 2 19 1110 1127 1109 1129 0.95

18 25 0.02 2.1 10.0 5.3 1 23 1185 1208 1185 1208 0.97

19 25 1.2 1.2e+02 4.4 1.2 1 23 1245 1268 1245 1268 0.95

20 25 0.064 6.7 8.4 6.2 1 23 1300 1323 1300 1323 0.97

21 25 2.9e-06 0.0003 22.0 0.3 2 23 1353 1374 1352 1374 0.95

22 25 1.4e-05 0.0015 19.9 0.4 1 23 1380 1402 1380 1402 0.99

23 25 6.7e-07 7e-05 24.0 2.6 1 23 1408 1430 1408 1430 0.98

24 25 4.8e-06 0.00051 21.3 1.8 1 23 1436 1458 1436 1458 0.99

25 25 0.054 5.7 8.6 0.7 1 22 1464 1485 1464 1488 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.23	25	6.6	1.2	1	23	242	265	242	265	0.90
2	25	2.3e-05	0.0024	19.2	1.1	1	23	271	294	271	294	0.97
3	25	0.00017	0.018	16.5	1.8	2	23	324	345	323	345	0.96
4	25	0.039	4.1	9.0	3.9	1	23	425	447	425	448	0.95
5	25	0.24	25	6.6	0.6	2	23	456	477	455	477	0.97
6	25	0.0021	0.22	13.0	1.4	2	23	522	543	521	543	0.97
7	25	0.019	2	10.0	0.8	2	20	556	574	555	577	0.94
8	25	0.0011	0.12	13.9	5.6	1	23	659	681	659	682	0.95
9	25	0.0011	0.12	13.9	0.4	1	21	689	709	689	710	0.95
10	25	0.027	2.9	9.5	1.2	1	23	721	744	721	744	0.94
11	25	0.00035	0.037	15.5	0.4	2	23	759	780	758	780	0.97
12	25	1.3e-06	0.00013	23.2	1.7	1	23	786	808	786	808	0.98
13	25	9.5	1e+03	1.5	2.0	3	23	841	861	839	861	0.79
14	25	0.015	1.6	10.3	2.3	1	23	937	961	937	961	0.97
15	25	0.0048	0.51	11.9	3.7	1	23	1031	1054	1031	1054	0.94
16	25	0.02	2.1	9.9	2.3	1	23	1061	1083	1061	1083	0.95
17	25	0.0022	0.23	13.0	0.1	2	19	1110	1127	1109	1129	0.95
18	25	0.02	2.1	10.0	5.3	1	23	1185	1208	1185	1208	0.97
19	25	1.2	1.2e+02	4.4	1.2	1	23	1245	1268	1245	1268	0.95
20	25	0.064	6.7	8.4	6.2	1	23	1300	1323	1300	1323	0.97
21	25	2.9e-06	0.0003	22.0	0.3	2	23	1353	1374	1352	1374	0.95
22	25	1.4e-05	0.0015	19.9	0.4	1	23	1380	1402	1380	1402	0.99
23	25	6.7e-07	7e-05	24.0	2.6	1	23	1408	1430	1408	1430	0.98
24	25	4.8e-06	0.00051	21.3	1.8	1	23	1436	1458	1436	1458	0.99
25	25	0.054	5.7	8.6	0.7	1	22	1464	1485	1464	1488	0.90

Sequence Information

Coding Sequence: ATGTCGAGCGGTATTAAAAGTGAATGTATTATAAATGGGGTACGCTATAAATGTCGTACTTGCTTTGACCCAGGACGTTTAGTCTACTCTTTATCGGATGAGGCCAGCCACACAAAGACATGGAATGACTTATTAAAGGATATTGCTAAGTTGCAGACAAACAACGATAATTTACTCCCTAAGACAATGTGCTGCAAGTGTTCgggaaaacttaaaaattcatatgattttatacttcaaatacataatgtgaataaaaaatatttagaactaTTGTCAAATTCGGGTGATCCACTAGAGGAAATTGACAATTTTACTGATTGTTTAGCAGAAACGACTATTGATTTGCCACTTGAGATAAAATTGGAAGAAGAATTGGTTGAACCGTTGAACACTGATTTAACCAACAAAGTTGCAAATCACAATAAAACGAAATCGGAACGTGAAgaCGCTAATGATTCCTTAATGGATGCATTTAATGAGGATCTGAATTCATTGGGAGAAATCGAAAGGCGCCAACTAAATTTAGACGATGACAATGACGCTAatgatttcaaaaatcaatCGAGttcTACATCATCTGATGAAAGCGATGACTATGTTCCTcttaaaaagttaaagaaagaGAATAACCGTAACAGTAGTAGCAGTCAACCAGTGAAGCGAAGAAAAGGTCGTCAAGCTCCagattattatgataaaattgaaaaggTTAACGATCGCTTTGCTTGTCTTATTTGTCAAAAGACCTTTTCATTACGAAAAGATTGTGGTCGTCACATAGCATCGATACACTTGCGTCACACCATGTTTCCTTGTGAATTTTGTGGACAAAGTTTTAGCCGCAAAGACAAGATACAGCAACACATTAAGCGCATGCATTCAGATATAACAGTGTATCCAGCTAAACATAAAGAATGGTTATTTGGAGATCGTTTATATAGTAAACCTATAGCTTGGCAACTTGTTCAATGTAAATTATGTGATACAAAATTCACAACAACTAAAGAACTGCGCAAACACTTGGAAAATCACAGTGATATAGACACGCTTCATCATTTAGAGTTAAGCGATAACATTATCCAACATTTGTATCCCAATATGATTGATTTAGACTTTGTTAAGGGAAGTATATGCAAAGATATTATTGAAAAGCATTGGTTCAAATATTACACGGTATTAAATGAACATTCATATGAAATGTCTATTAGTGACACTGAAGCGGAAGATgtggaagaagaaaaaaatatatcagcagAACGGGCCAACAAATACAAGTGTGATTTGTGTGCTCAagttttttcatacaaatatcaaGTTTTCACTCATTTTAAAGAACATCACGGCAATGACGAAATTCCTTTGAAATGTGGTCTCTGcaaattggaatttatttcaattaaaatgtatgaacaaCATTCAAAAACTCACTGTCGCAATAGACATAAAGTTTTACTTTGTGCCCATTGCCCGGCAAAGTTTGTTTGGCCAGAAAACATGAAAAATCACAATTGTGCAACCAAAATATCACTAAGTGCAAAGGCTACGTCTAAAGCTAAATTAACATGTAATATATGTGAACGCAAATTTGAggtaaagacaaaatttttaaaacatttggaaACTCATAGAGATGGCAGATTGGTATCTTCCAAAACAATAATACGATGCGCACTTTGTCCACAATCTTTTGAAAAACTACGGCAATTGCGCCAACATATGCCTCATCATGCCGATGGTAAAACAGGCATTGACTTTAAACACAGTCTTTATGTTAAGCGTTTTGAACGCACAAAATCAATCGACTATGCACTGCTGCAGCAGGAAATACAAAACGCTTATAGAAAGTCACAAATAAGTCGTTTTTACCGAGCCATCGATAAGGATGGTAATGAATTGGATATTTTAGATTCGGATAGTGATGTGGATGAGGAAGAGGTAGTAGACGTTAAtggtgaaaatgttaaaaaggaGTACACGTGTGAACTTTGCAGTGAAGTTTTTAAAAGAcgaaaatatctattaaaacaTCAGCATGAACATCACAATGATGTGCCACTACCCTTTAAGTGTAACGACTGTACCCAACAATATGTGAGTAATGATTTGTTGCAACAACATTTGCTAAGGGATTGCTGGAATGAACACCGCCGTATAGCTCATCAATGTGATTATTGTAATGCTCGTTTTGTATGGCCTAATAATCTCTTTAAACATAAAGAAATTCagcataaaaatcaaaaacaaccaAAACCACAAAGGGCAAGTACCCTTAAGTGTGAATACTGTGAGAAGGTATTCATATGGCCTAAAGATTTAGTGCGTCATAGAAAAACTCATACAGAAGGCAAAAAATTCTCCTGTCCGCATTGTGAGCGTAAATTTCAGCGCAAGGATAATTTGTTGGCTCACATACGAATACATTGCCCAGATGGTATTCCCACAATATCAAATCCCGGTAAAGGTATCAATTATATATTGCCACATTTATTAAAACCACATGGCTGCAAACGTATTCAGTGTATGATTTGCTTTTCCGAACATAATCGAATACGCGATTTAAGATCCCACTTACGAACACATCGATTTTCagttaattttgataaaagaaaagaaaaggaaaCATTGGATACTATATCATCTCAGCTCTATCCTGATGAGACGGTGACTCTGACAGAAGAGGAAATTGTAAAACGTATTAGTGCTGATATTGCGTCAGAAAACAATTTGGAACGTTTTTATTCTATAACAAGTGAAAACGGTAACGAAGTCAGTTTAGATAaagcaaatattaaatctaAGCGTGATTATAAATGTGATTTATGTCCTCAATTAAGTTTTAATcgtaaatataaacttttcgaACACCAGAACAAACAACATAAATGGGAGGAAGCTCGTCACATGTGTATACATTGTAATAGCAGATTTCTTTCGTCATATATGCTACAATTACACTataaaaatcaatgtaaaaatagtaaaaagcgTCACTTTTGTCGTCGTTGTCCCTTGCGTTTTATGTGGAAAAATAATATGAAGACTCACATTGTAATGGAACATGGTCAGGagATCGATTTAAATCGTCGTCATGAATGTTTCCTATGCCAAGAAAAGTTCACCTTTCAAAAGGAACTAAAACGTCATTTGACCAATGATCATTCCTCCAATGCTGCCCTCCATTATTGTCTTCTCTGTCCCAAAACATTCTTTAATCTTGAACATCTAGATGAGCATTTGAGTGGTCATCGTTTGACCACAGCCGATGTCACGACCGTTGAAAGTATAATACATTCCACATGTTGGCCGAATGgggaaaaaacaattaaatgtaaaatatgtgGCCTAGTATTCGATACTATGGCCAATTTGAGGGAACacttttcaccaaaaaatccCCAAAATATGTGTGCCAATCAACATTCATTGTCAAATTATTCCATAACGAACCAGAAAGGATTCGAATTGCACTTAGAACTGGATTCTGAAACAGAAATTGAGGATGAAGCAGAAATGGGACCTAATAAAGGCAACAAAAGACCTATGTATCCCTATAACTGTTGCATGTGTAGTATGTCATTTAAGCGAAAGTATCGTATGGCTCAACATCAACGTTCTATGCACAATTATGAAGTGCTAGAGCTAAAATGTGAGCGATGTATTTTTAGAACCGTCTCACAgaaagtaTTAGATTATCATAAGGCCACACAGTGTTTTAATTCAGAAAAACAATATGAATGTATCCATtgcaatttcaaatttatgtggGAAGAAAATCTTAATAATCATATTGCTACATTTCATACTCCAAAGGATTTACCCAAGGAAGCGGACATTGTTAAGATGGTAACTGCTATTGAACCTATACCAGCTAACAGTAAAAGTGaaactaatatttttgaatgtatGGACTGTCACCGACGATACAATCGTAAAGATCGCTATAAagctcattttaaaaaattccacagTAATGATTTACAATTAAGAACAGATTCCAAGGTTTTCGCTACAAGACCTCGCAAACAGccttcaaaaaatttggaaaagaaatttttatgtgCCTTTTGTGGCCTGGCATTTGCAAACAACTCCAATCTAACGGTACACATGAGACGACACACAGGCGAGAAACCTTTCAAATGTGATCTTTGCGAAATGGCTTTTCCACGAACATCCGATTTACAGGCTCACCGACGATCACATACCGGCGAACGTCCCTTTAAATGCGAATATTGCGACAAATCGTTTTCTcgtcaatataaattaaatgttcaCAATCGAATTCACACCGGCGAACGTCCATATCAATGTACGTTTTGTGAGAAATCATTTATTCAATCGAATGATTTAACTTTACATTTGCGTCGTCATACAGGTGAAAGACCTTATATGTGTGACATTTGCGGTGAAGGTTTCATTTGTGCCACATCTCTGAAACAGCATCGTACTTCAAGGGGTCATCAAGAAgaaaaaatggatttaaaaatattgacacAATTCGATAtgaagttttaa
Protein Sequence: MSSGIKSECIINGVRYKCRTCFDPGRLVYSLSDEASHTKTWNDLLKDIAKLQTNNDNLLPKTMCCKCSGKLKNSYDFILQIHNVNKKYLELLSNSGDPLEEIDNFTDCLAETTIDLPLEIKLEEELVEPLNTDLTNKVANHNKTKSEREDANDSLMDAFNEDLNSLGEIERRQLNLDDDNDANDFKNQSSSTSSDESDDYVPLKKLKKENNRNSSSSQPVKRRKGRQAPDYYDKIEKVNDRFACLICQKTFSLRKDCGRHIASIHLRHTMFPCEFCGQSFSRKDKIQQHIKRMHSDITVYPAKHKEWLFGDRLYSKPIAWQLVQCKLCDTKFTTTKELRKHLENHSDIDTLHHLELSDNIIQHLYPNMIDLDFVKGSICKDIIEKHWFKYYTVLNEHSYEMSISDTEAEDVEEEKNISAERANKYKCDLCAQVFSYKYQVFTHFKEHHGNDEIPLKCGLCKLEFISIKMYEQHSKTHCRNRHKVLLCAHCPAKFVWPENMKNHNCATKISLSAKATSKAKLTCNICERKFEVKTKFLKHLETHRDGRLVSSKTIIRCALCPQSFEKLRQLRQHMPHHADGKTGIDFKHSLYVKRFERTKSIDYALLQQEIQNAYRKSQISRFYRAIDKDGNELDILDSDSDVDEEEVVDVNGENVKKEYTCELCSEVFKRRKYLLKHQHEHHNDVPLPFKCNDCTQQYVSNDLLQQHLLRDCWNEHRRIAHQCDYCNARFVWPNNLFKHKEIQHKNQKQPKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFSCPHCERKFQRKDNLLAHIRIHCPDGIPTISNPGKGINYILPHLLKPHGCKRIQCMICFSEHNRIRDLRSHLRTHRFSVNFDKRKEKETLDTISSQLYPDETVTLTEEEIVKRISADIASENNLERFYSITSENGNEVSLDKANIKSKRDYKCDLCPQLSFNRKYKLFEHQNKQHKWEEARHMCIHCNSRFLSSYMLQLHYKNQCKNSKKRHFCRRCPLRFMWKNNMKTHIVMEHGQEIDLNRRHECFLCQEKFTFQKELKRHLTNDHSSNAALHYCLLCPKTFFNLEHLDEHLSGHRLTTADVTTVESIIHSTCWPNGEKTIKCKICGLVFDTMANLREHFSPKNPQNMCANQHSLSNYSITNQKGFELHLELDSETEIEDEAEMGPNKGNKRPMYPYNCCMCSMSFKRKYRMAQHQRSMHNYEVLELKCERCIFRTVSQKVLDYHKATQCFNSEKQYECIHCNFKFMWEENLNNHIATFHTPKDLPKEADIVKMVTAIEPIPANSKSETNIFECMDCHRRYNRKDRYKAHFKKFHSNDLQLRTDSKVFATRPRKQPSKNLEKKFLCAFCGLAFANNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRSHTGERPFKCEYCDKSFSRQYKLNVHNRIHTGERPYQCTFCEKSFIQSNDLTLHLRRHTGERPYMCDICGEGFICATSLKQHRTSRGHQEEKMDLKILTQFDMKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259362;
90% Identity: iTF_01261184;
80% Identity: -