Preg019265.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_001735585.1
- Location
- MINJ01004188.1:943-2995[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-117 5e-113 378.4 26.7 1 299 21 317 21 318 0.93 2 2 0.033 1.2e+03 -0.5 3.7 220 245 346 371 321 392 0.47
Sequence Information
- Coding Sequence
- ATGACGTATATGAAAACATATTCCTctatatacgtacatacatatattttgcaaacttcggCTGAGGCAAGGTTAGCTGCCAGAAGGCATGCCAGAGCAGAAGCTCGTGAAATACGAATGCGAGAGTTAGAACGCCAGCAAAAAGAACAAGAATCTAATGCAGATCGTGTCTTCGATATGCACTCAAATGTTACAGGCATAACACCACTGTCACATATGCGTCTGGGCTTGGGAAGTTCACCAGTTACGGGCTTACTCAACTCCACAAGAGGCAATTCTATGTCATCGAGACGTAGTAGTGAAGATTCTTTAGAAGAGGAAGGGCGCAGTTTAAGGGATATACGTCATGAGTTGAagGATGTAGAAGAACGGTTTCGCAAGGCTATGATAGCGAATGCTCAATTGGATAATGATCGTGCCTCACAGACCTATCAAATTCAGTTACTTAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAACGTGAGTGTAAGGAAAAGACACGCGATTGTAATGCCTTGAAACGATCATTGGATAAACTAAGTGAAGAGCTAAAACTGGTACAGGGTCAGCTAAATGAGCGTGACACACTGATAGCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAGTTTAGCGAAGagaaacaacaactacaacatgaAGTCCAACAGTTGCAGGAACAATTAGAAACTTATAAAAGTCAGGGTAAGGGACGCGGTAAAGGCAATTCCTCAAATGGTCCTTTAGGTTCAGACGATGATGATTATGAAGCTCAAAgagAAGCTAATAAAATCATCTcggattataaatataaattacaaaaagctGAACAAGAAATTGCTAGTCTACAATCCAGTTTAGCCCGTTCGGAGACACAAGTTATACGCTATAAAAGTACCGCAGAGGCGGCCGAAAAAGCTGAGGCCGAATTGAAAATCGAAAGAAGGAAACTGCAAAGAGAGAATCGCGAGGCCATGGAAAAACTAGAAGAGTTAGAAACCTCAAATAATCATTTGCTTAAACGTTTGGATAAATTAAAGAATGCCAAAAGTGCTTTGCTCAAAGATCTCTGA
- Protein Sequence
- MTYMKTYSSIYVHTYILQTSAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSNVTGITPLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQHEVQQLQEQLETYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331516;
- 90% Identity
- iTF_00331516;
- 80% Identity
- iTF_01261001;